Os03g0314800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant neutral invertase family protein.
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Os03g0314800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant neutral invertase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.4 | 0.34 | 12.5 | 1.9 | 1.81 | -23.2 | 0.807 | -48.6 | -0.179 | 8.04 | 15.03 | 4711 | -- | -- |
| 56.85 | 0.354 | 11.7 | -0.154 | 1.8 | -0.0243 | 0.838 | -- | -0.239 | 8.02 | 15.03 | 4711 | -- | -- |
| 54.32 | 0.343 | 12.5 | 1.93 | 1.81 | -23.2 | -- | -48.5 | -0.179 | 8.03 | 15.05 | 4632 | -- | -- |
| 55.59 | 0.347 | 11.7 | 0.107 | 1.84 | -0.435 | -- | -- | -0.115 | 7.97 | 19.3 | 4444 | -- | -- |
| 231.67 | 0.709 | 12.6 | 1.96 | -- | -23.1 | -- | -48.3 | -0.15 | -- | 15.01 | 5094 | -- | -- |
| 56.85 | 0.353 | 11.7 | -0.155 | 1.8 | -- | 0.84 | -- | -0.239 | 8.02 | -- | -- | -- | -- |
| 58.95 | 0.36 | 11.7 | -0.132 | 1.8 | -- | -- | -- | -0.24 | 8 | -- | -- | -- | -- |
| 232.75 | 0.711 | 11.7 | 0.321 | -- | -0.466 | -- | -- | -0.0852 | -- | 18.1 | 20921 | -- | -- |
| 55.84 | 0.348 | 11.7 | -- | 1.81 | -0.373 | -- | -- | -0.155 | 7.99 | 19.3 | 4521 | -- | -- |
| 236.91 | 0.719 | 11.8 | -0.114 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 59.41 | 0.361 | 11.7 | -- | 1.8 | -- | -- | -- | -0.225 | 8.01 | -- | -- | -- | -- |
| 232.34 | 0.71 | 11.7 | -- | -- | -0.361 | -- | -- | -0.137 | -- | 19.8 | 3648 | -- | -- |
| 237.25 | 0.719 | 11.8 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.49 | wind | 1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 2 | 49.68 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 3 | 49.71 | wind | 7 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 5 | 49.72 | wind | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 7 | 49.74 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 13 | 49.77 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 14 | 49.82 | humidity | 50 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 15 | 49.83 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 44 | 50.00 | wind | 1 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 45 | 50.00 | wind | 9 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 48 | 50.02 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 73 | 50.08 | wind | 1 | 14400 | > th | dose dependent | sin | 12 | NA |
| 74 | 50.08 | wind | 9 | 14400 | < th | dose dependent | sin | 12 | NA |
| 83 | 50.10 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 92 | 50.11 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 103 | 50.13 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 147 | 50.21 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 169 | 50.23 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 181 | 50.24 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 183 | 50.24 | wind | 5 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 225 | 50.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 242 | 50.30 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 257 | 50.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 269 | 50.33 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 311 | 50.37 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 314 | 50.37 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 328 | 50.38 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 350 | 50.40 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 351 | 50.40 | wind | 7 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 394 | 50.43 | wind | 9 | 14400 | < th | dose dependent | sin | 5 | NA |
| 408 | 50.44 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 415 | 50.44 | wind | 1 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 428 | 50.45 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 430 | 50.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 445 | 50.46 | wind | 1 | 14400 | > th | dose dependent | sin | 5 | NA |
| 499 | 50.50 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 504 | 50.50 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 680 | 50.62 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 684 | 50.62 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 699 | 50.63 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 726 | 50.65 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 744 | 50.66 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 762 | 50.67 | wind | 3 | 14400 | < th | dose independent | sin | 12 | NA |
| 763 | 50.67 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 796 | 50.69 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 797 | 50.69 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 813 | 50.69 | wind | 7 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 815 | 50.69 | wind | 1 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 821 | 50.70 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 828 | 50.70 | wind | 9 | 14400 | < th | dose dependent | no | NA | NA |
| 855 | 50.71 | wind | 1 | 14400 | > th | dose dependent | no | NA | NA |
| 888 | 50.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 933 | 50.74 | wind | 9 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 949 | 50.75 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 23 |