Os02g0529400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant neutral invertase family protein.
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Os02g0529400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant neutral invertase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.22 | 0.221 | 13.2 | 0.948 | 0.36 | -0.938 | -0.362 | 1.35 | 0.0504 | 6.32 | 17.3 | 1542 | -- | -- |
| 24.03 | 0.228 | 13.3 | 0.638 | 0.345 | -0.984 | -0.297 | -- | -0.0314 | 5.28 | 14.22 | 2335 | -- | -- |
| 22.29 | 0.22 | 13.2 | 0.988 | 0.291 | -0.952 | -- | 1.46 | 0.0597 | 5.79 | 17.49 | 1985 | -- | -- |
| 24.23 | 0.229 | 13.3 | 0.639 | 0.348 | -0.981 | -- | -- | -0.0368 | 5.19 | 13.36 | 2356 | -- | -- |
| 26.25 | 0.239 | 13.2 | 1.02 | -- | -1.02 | -- | 1.53 | 0.0789 | -- | 17.46 | 1958 | -- | -- |
| 42.59 | 0.306 | 13.3 | 0.274 | 0.354 | -- | -0.338 | -- | -0.237 | 6.5 | -- | -- | -- | -- |
| 42.88 | 0.307 | 13.3 | 0.269 | 0.353 | -- | -- | -- | -0.236 | 6.46 | -- | -- | -- | -- |
| 28.31 | 0.248 | 13.3 | 0.645 | -- | -1.1 | -- | -- | -0.022 | -- | 10.81 | 1963 | -- | -- |
| 32.21 | 0.264 | 13.3 | -- | 0.389 | -0.83 | -- | -- | -0.142 | 5.51 | 10.09 | 1237 | -- | -- |
| 49.34 | 0.328 | 13.3 | 0.278 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 44.79 | 0.313 | 13.3 | -- | 0.356 | -- | -- | -- | -0.266 | 6.42 | -- | -- | -- | -- |
| 33.92 | 0.271 | 13.3 | -- | -- | -1.03 | -- | -- | -0.138 | -- | 6.505 | 489 | -- | -- |
| 51.38 | 0.335 | 13.3 | -- | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 6 | 21.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 9 | 21.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 49 | 21.56 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 50 | 21.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 53 | 21.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 119 | 21.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 136 | 21.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 138 | 21.74 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 164 | 21.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 243 | 21.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 289 | 21.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 316 | 22.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 654 | 22.48 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 704 | 22.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 716 | 22.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 718 | 22.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 882 | 22.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 965 | 22.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |