Os04g0409900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Neutral/alkaline invertase 4 (Fragment).
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Os04g0409900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Neutral/alkaline invertase 4 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.6 | 0.555 | 11.6 | -1.02 | 0.912 | -1.27 | 1.04 | 2.87 | -0.461 | 4.87 | 1.346 | 1497 | -- | -- |
| 144.16 | 0.559 | 11.6 | -0.819 | 0.914 | -1.78 | 1.3 | -- | -0.474 | 4.65 | 0.4377 | 1501 | -- | -- |
| 142.13 | 0.555 | 11.6 | -1.03 | 0.923 | -1.28 | -- | 3.06 | -0.47 | 4.84 | 1.33 | 1508 | -- | -- |
| 147.99 | 0.567 | 11.6 | -0.827 | 0.906 | -1.7 | -- | -- | -0.471 | 5.12 | 0.43 | 1480 | -- | -- |
| 184.41 | 0.632 | 11.7 | -0.996 | -- | -1.17 | -- | 3.12 | -0.449 | -- | 1.66 | 1458 | -- | -- |
| 173.07 | 0.617 | 11.6 | -0.445 | 0.874 | -- | 1.12 | -- | -0.211 | 5.46 | -- | -- | -- | -- |
| 175.66 | 0.621 | 11.6 | -0.44 | 0.888 | -- | -- | -- | -0.215 | 5.84 | -- | -- | -- | -- |
| 188.01 | 0.639 | 11.6 | -0.795 | -- | -1.62 | -- | -- | -0.414 | -- | 0.45 | 1447 | -- | -- |
| 163.09 | 0.595 | 11.6 | -- | 0.88 | -1.21 | -- | -- | -0.375 | 4.95 | 1.587 | 1508 | -- | -- |
| 216.57 | 0.688 | 11.6 | -0.412 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 180.76 | 0.629 | 11.6 | -- | 0.882 | -- | -- | -- | -0.166 | 5.86 | -- | -- | -- | -- |
| 201.41 | 0.661 | 11.6 | -- | -- | -1.15 | -- | -- | -0.364 | -- | 1.62 | 1444 | -- | -- |
| 221.06 | 0.694 | 11.6 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 3 | 131.29 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 8 | 132.85 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 10 | 133.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 16 | 134.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 37 | 135.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 60 | 135.88 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 65 | 136.00 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 130 | 137.55 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 189 | 138.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 218 | 139.32 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 243 | 139.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 269 | 140.31 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 294 | 140.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 307 | 140.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 313 | 140.63 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 320 | 140.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 342 | 140.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 347 | 140.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 369 | 140.89 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 377 | 140.96 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 386 | 141.04 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 415 | 141.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 484 | 141.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 504 | 141.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 550 | 141.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 585 | 141.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 607 | 141.91 | humidity | 50 | 720 | > th | dose dependent | sin | 23 | NA |
| 627 | 142.00 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 14 |
| 708 | 142.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 723 | 142.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 726 | 142.29 | humidity | 60 | 720 | > th | dose dependent | sin | 21 | NA |
| 814 | 142.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 816 | 142.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 878 | 142.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 911 | 142.69 | humidity | 70 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 914 | 142.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 929 | 142.73 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 953 | 142.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 988 | 142.84 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |