BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0348300 Os04g0348300|AK102248
(769 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0348300 Similar to Cdc5 (Fragment) 1432 0.0
Os07g0627300 Similar to Myb-related protein B (B-Myb) 77 5e-14
Os01g0841500 Similar to C-myb-like transcription factor (Fr... 73 8e-13
Os07g0244500 71 2e-12
Os12g0238000 Myb, DNA-binding domain containing protein 71 3e-12
Os02g0271900 Myb, DNA-binding domain containing protein 70 5e-12
Os07g0222600 70 9e-12
Os01g0855400 Similar to Myb-related protein B (B-Myb) 69 1e-11
>Os04g0348300 Similar to Cdc5 (Fragment)
Length = 769
Score = 1432 bits (3708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/769 (92%), Positives = 708/769 (92%)
Query: 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
Sbjct: 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60
Query: 61 EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPR 120
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPR
Sbjct: 61 EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPR 120
Query: 121 KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGXXXXXXXXXXXXXXXXX 180
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRG
Sbjct: 121 KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180
Query: 181 XXSLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFYDTVGEDRPLEHVQFPT 240
SLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFYDTVGEDRPLEHVQFPT
Sbjct: 181 LASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFYDTVGEDRPLEHVQFPT 240
Query: 241 TIEELEGKRRVDIEAQLRKQDIARNKILQRQDAPAAIMQANRLNDPEAVTKRSKLMLPPP 300
TIEELEGKRRVDIEAQLRKQDIARNKILQRQDAPAAIMQANRLNDPEAVTKRSKLMLPPP
Sbjct: 241 TIEELEGKRRVDIEAQLRKQDIARNKILQRQDAPAAIMQANRLNDPEAVTKRSKLMLPPP 300
Query: 301 QISDHELEEIAKMGNAGDPSLVEELGEGSTATRALLSSYSQTPRLGMTPLRTPQRTPAGK 360
QISDHELEEIAKMGNAGDPSLVEELGEGSTATRALLSSYSQTPRLGMTPLRTPQRTPAGK
Sbjct: 301 QISDHELEEIAKMGNAGDPSLVEELGEGSTATRALLSSYSQTPRLGMTPLRTPQRTPAGK 360
Query: 361 GDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNPMATPLASPGPG 420
GDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNPMATPLASPGPG
Sbjct: 361 GDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNPMATPLASPGPG 420
Query: 421 ATPRIGMTPSRDGSSFGLTPKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSGFA 480
ATPRIGMTPSRDGSSFGLTPKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSGFA
Sbjct: 421 ATPRIGMTPSRDGSSFGLTPKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSGFA 480
Query: 481 SIPQPKNEYQIVMPPITXXXXXXXXXXXXDMSDXXXXXXXXXXXXXXXXXXKRSKVLQRS 540
SIPQPKNEYQIVMPPIT DMSD KRSKVLQRS
Sbjct: 481 SIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSDRLARERAEEQARQEALLRKRSKVLQRS 540
Query: 541 LPRPPAASIEILRQTLIKGGESRSRSTFVPPTSLEQADXXXXXXXXXXXXHDNAKYPLDE 600
LPRPPAASIEILRQTLIKGGESRSRSTFVPPTSLEQAD HDNAKYPLDE
Sbjct: 541 LPRPPAASIEILRQTLIKGGESRSRSTFVPPTSLEQADELINEELLRLLEHDNAKYPLDE 600
Query: 601 KTQKDKKKGSKRQANGTPSVPEIEDFDEDELKEANSMLEEEVQYLRVAMGHESESLEDFV 660
KTQKDKKKGSKRQANGTPSVPEIEDFDEDELKEANSMLEEEVQYLRVAMGHESESLEDFV
Sbjct: 601 KTQKDKKKGSKRQANGTPSVPEIEDFDEDELKEANSMLEEEVQYLRVAMGHESESLEDFV 660
Query: 661 KAHDACQEDLMFFPNNNSYGLASVAGNSDKIAALQYEFEIVKKRMDDEAKKASRLEQKIK 720
KAHDACQEDLMFFPNNNSYGLASVAGNSDKIAALQYEFEIVKKRMDDEAKKASRLEQKIK
Sbjct: 661 KAHDACQEDLMFFPNNNSYGLASVAGNSDKIAALQYEFEIVKKRMDDEAKKASRLEQKIK 720
Query: 721 LLTPRIPGTELVNSGHRFKIHSSRWTLQQQSLNAFKSCRSRNRWLHLIV 769
LLTPRIPGTELVNSGHRFKIHSSRWTLQQQSLNAFKSCRSRNRWLHLIV
Sbjct: 721 LLTPRIPGTELVNSGHRFKIHSSRWTLQQQSLNAFKSCRSRNRWLHLIV 769
>Os07g0627300 Similar to Myb-related protein B (B-Myb)
Length = 538
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEK 69
W ED++L+ + +G + W I++ K+A+QC+ RWY +L+ KK W+REED
Sbjct: 33 WSTEEDDVLRTQIALHGTDNWTIIAAQFKDKTARQCRRRWYNYLNSECKKGGWSREEDLL 92
Query: 70 LLHLAKLMPTQWRTIAPIV-GRTPSQCLERYEKLLDAACAKDENYEPN 116
L K++ +W IA +V GRT + R+ L DE ++ N
Sbjct: 93 LCEAQKVLGNKWTEIAKVVSGRTDNAVKNRFSTLCKRRAKDDELFKEN 140
>Os01g0841500 Similar to C-myb-like transcription factor (Fragment)
Length = 587
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTRE 65
KGG W EDE L+ AV Y W +I+ ++ QC RW + L+P + K WT+E
Sbjct: 67 KGG-WTPEEDETLRKAVEAYKGRNWKKIAECFPYRTEVQCLHRWQKVLNPELIKGPWTQE 125
Query: 66 EDEKLLHLA-KLMPTQWRTIAPIV-GRTPSQCLERYEKLLDAACAKD 110
ED++++ L K PT+W IA + GR QC ER+ L+ KD
Sbjct: 126 EDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHLNPEIRKD 172
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P I+K WT EE+
Sbjct: 120 GPWTQEEDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHLNPEIRKDAWTTEEE 179
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
+ L++ ++ +W IA ++ GRT
Sbjct: 180 QALINAHRIYGNKWAEIAKVLPGRT 204
>Os07g0244500
Length = 324
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWT 63
+IKGG W EDE+L+ V +G +WA I+ L + KQC+ RW L P IKK WT
Sbjct: 87 LIKGG-WTREEDEVLRQMVRHHGDRKWAEIAKSLPGRIGKQCRERWTNHLHPDIKKGIWT 145
Query: 64 REEDEKLLHLAKLMPTQWRTIA 85
EED KL+ + +W IA
Sbjct: 146 EEEDRKLIKAHQTYGNRWSAIA 167
>Os12g0238000 Myb, DNA-binding domain containing protein
Length = 999
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED IL AV Y W +I+ ++ QC RW + L+P + K W++EED
Sbjct: 56 GNWTPEEDSILSRAVQTYKGKNWKKIAECFPDRTDVQCLHRWQKVLNPELVKGPWSKEED 115
Query: 68 EKLLHLA-KLMPTQWRTIAPIV-GRTPSQCLERYEKLLDAACAKD 110
+ ++ + KL P +W TIA + GR QC ER+ L+ K+
Sbjct: 116 DIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWHNHLNPGINKE 160
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+I+ V K G +W+ I+ L + KQC+ RW+ L+P I K WT+EE+
Sbjct: 108 GPWSKEEDDIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWHNHLNPGINKEAWTQEEE 167
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
L+H ++ +W + + GRT
Sbjct: 168 ITLIHAHRMYGNKWAELTKFLPGRT 192
>Os02g0271900 Myb, DNA-binding domain containing protein
Length = 547
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 3 IMIKGGV---------WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWL 53
IM K G+ W EDE L + YG N W ++ + ++A+QC+ RW L
Sbjct: 51 IMDKCGIEISEKRRRRWSTKEDESLIQMINIYGHNNWETVARAIPGRNAQQCRVRWKFNL 110
Query: 54 DPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERY 99
DP+I K W+REE+ +L+H+ ++ +W +A GRT + E +
Sbjct: 111 DPAISKQAWSREEELRLIHVQQIFGNKWCRMAEHFTGRTSAAIKEHW 157
>Os07g0222600
Length = 438
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWT 63
++KGG W EDE+L+ V +G +WA I+ L + KQC+ RW L P IKK WT
Sbjct: 106 LVKGG-WTREEDEVLRQMVRHHGDRKWAEIAKSLPGRVGKQCRERWTNHLHPDIKKDIWT 164
Query: 64 REEDEKLLHLAKLMPTQWRTIA 85
EED L+ + W IA
Sbjct: 165 EEEDRMLIEAHQTYGNSWSAIA 186
>Os01g0855400 Similar to Myb-related protein B (B-Myb)
Length = 425
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W EDE+LK V+ +G +WA I+ L + KQC+ RW L P IKK WT E+D
Sbjct: 94 GAWTRQEDEVLKQMVILHGDRKWATIAKSLPGRIGKQCRERWTNHLRPDIKKDVWTEEDD 153
Query: 68 EKLLHLAKLMPTQWRTIA 85
L+ K +W IA
Sbjct: 154 RMLIEAHKTYGNRWSVIA 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,340,501
Number of extensions: 1243076
Number of successful extensions: 4150
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 4206
Number of HSP's successfully gapped: 13
Length of query: 769
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 660
Effective length of database: 11,344,475
Effective search space: 7487353500
Effective search space used: 7487353500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)