Os01g0841500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C-myb-like transcription factor (Fragment).
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Os01g0841500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to C-myb-like transcription factor (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.75 | 0.219 | 11.7 | 0.405 | 0.104 | 0.803 | -0.558 | 0.77 | 0.498 | 23.5 | 28.98 | 131 | -- | -- |
| 22.43 | 0.221 | 11.6 | 0.511 | 0.116 | 0.781 | -0.446 | -- | 0.532 | 23 | 29.5 | 124 | -- | -- |
| 22.87 | 0.223 | 11.7 | 0.476 | 0.127 | 0.771 | -- | 0.467 | 0.506 | 23.9 | 28.95 | 168 | -- | -- |
| 23.05 | 0.224 | 11.6 | 0.549 | 0.119 | 0.763 | -- | -- | 0.524 | 0.317 | 29.33 | 132 | -- | -- |
| 23.55 | 0.226 | 11.6 | 0.507 | -- | 0.864 | -- | 0.435 | 0.527 | -- | 29.29 | 130 | -- | -- |
| 30.81 | 0.26 | 11.7 | 0.354 | 0.339 | -- | -0.185 | -- | 0.371 | 2.17 | -- | -- | -- | -- |
| 30.93 | 0.26 | 11.7 | 0.359 | 0.34 | -- | -- | -- | 0.372 | 2.32 | -- | -- | -- | -- |
| 23.66 | 0.227 | 11.6 | 0.571 | -- | 0.848 | -- | -- | 0.542 | -- | 29.5 | 98 | -- | -- |
| 30.47 | 0.257 | 11.7 | -- | 0.184 | 0.595 | -- | -- | 0.402 | 1.81 | 102.2 | 69 | -- | -- |
| 37.78 | 0.287 | 11.7 | 0.374 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 34.33 | 0.274 | 11.7 | -- | 0.347 | -- | -- | -- | 0.332 | 2.34 | -- | -- | -- | -- |
| 31.86 | 0.264 | 11.7 | -- | -- | 0.791 | -- | -- | 0.428 | -- | 102.2 | 69 | -- | -- |
| 41.46 | 0.301 | 11.7 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.52 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 28 | 20.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 30 | 20.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 32 | 20.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 49 | 20.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 51 | 20.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 95 | 21.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 161 | 21.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 172 | 21.76 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 175 | 21.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 211 | 21.92 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 21 |
| 212 | 21.92 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 231 | 22.01 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 234 | 22.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 242 | 22.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 293 | 22.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 333 | 22.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 356 | 22.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 376 | 22.50 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 442 | 22.67 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 456 | 22.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 608 | 23.08 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 615 | 23.11 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 622 | 23.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 671 | 23.22 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 694 | 23.26 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 710 | 23.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 711 | 23.30 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 8 |
| 732 | 23.35 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 20 |
| 783 | 23.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 834 | 23.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 851 | 23.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 871 | 23.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 892 | 23.60 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 901 | 23.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 944 | 23.68 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |