Os04g0348300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cdc5 (Fragment).
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Os04g0348300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cdc5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.74 | 0.186 | 12 | 1.07 | 0.442 | -0.379 | 0.403 | -1.72 | 0.265 | 15.4 | 24.8 | 1154 | -- | -- |
| 18.65 | 0.203 | 12.1 | 0.768 | 0.329 | -0.335 | 0.189 | -- | 0.202 | 16 | 39.89 | 187 | -- | -- |
| 16.19 | 0.187 | 12 | 1.04 | 0.436 | -0.423 | -- | -1.7 | 0.259 | 15.4 | 23.9 | 1295 | -- | -- |
| 18.74 | 0.202 | 12.1 | 0.766 | 0.323 | -0.336 | -- | -- | 0.204 | 15.5 | 50.08 | 138 | -- | -- |
| 21.1 | 0.214 | 12 | 0.894 | -- | -0.615 | -- | -1.34 | 0.202 | -- | 32.41 | 148 | -- | -- |
| 19.73 | 0.208 | 12 | 0.832 | 0.419 | -- | 0.206 | -- | 0.25 | 15.6 | -- | -- | -- | -- |
| 19.86 | 0.209 | 12 | 0.835 | 0.419 | -- | -- | -- | 0.251 | 15.5 | -- | -- | -- | -- |
| 22.73 | 0.222 | 12.1 | 0.683 | -- | -0.695 | -- | -- | 0.149 | -- | 36.25 | 123 | -- | -- |
| 32.59 | 0.266 | 12.1 | -- | 0.209 | -0.704 | -- | -- | 0.0756 | 14.9 | 54.19 | 205 | -- | -- |
| 29.67 | 0.255 | 12 | 0.818 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 38.25 | 0.289 | 12.1 | -- | 0.403 | -- | -- | -- | 0.158 | 15.5 | -- | -- | -- | -- |
| 34.24 | 0.273 | 12.1 | -- | -- | -0.921 | -- | -- | 0.0483 | -- | 65.3 | 137 | -- | -- |
| 47.31 | 0.321 | 12.1 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.68 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 2 | 15.72 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 12 | 15.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 16 | 15.81 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 17 | 15.83 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 20 | 15.85 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 32 | 15.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 36 | 15.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 61 | 15.94 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 67 | 15.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 72 | 15.95 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 81 | 15.96 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 83 | 15.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 89 | 15.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 90 | 15.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 97 | 15.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 219 | 16.04 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 239 | 16.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 286 | 16.08 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 309 | 16.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 368 | 16.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 377 | 16.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 391 | 16.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 412 | 16.16 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 423 | 16.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 451 | 16.19 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 452 | 16.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 471 | 16.20 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 490 | 16.21 | humidity | 90 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 569 | 16.25 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 761 | 16.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 787 | 16.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 789 | 16.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 823 | 16.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 825 | 16.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 851 | 16.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 901 | 16.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 908 | 16.36 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |