FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0238000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.74 (0.0415) R2 : 0.155
β1 : 1.81 (0.239) R2dD : 0.448 R2D : -0.431
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.703 (0.116) R2dE : 0.0938 R2E : -0.0537
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.08 (0.663) R2dD*E : 0.433 R2D*E : -0.243
γ1 : 0.314 (0.0928) R2dN8 : 0.0509 R2N8 : -0.118
σ : 0.606
deviance : 169.3
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.52
memory length : 2560
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.93 0.583 4.75 1.77 0.551 -0.635 -0.429 5.18 0.306 15.6 20.44 1703 -- --
171.52 0.61 4.9 0.557 0.485 -0.741 -0.441 -- 0.0371 15.3 8.073 9999 -- --
154.4 0.579 4.75 1.79 0.547 -0.642 -- 5.2 0.31 15.7 20.7 1646 -- --
172.01 0.611 4.9 0.541 0.49 -0.731 -- -- 0.0304 15.6 6.305 9999 -- --
169.3 0.606 4.74 1.81 -- -0.703 -- 5.08 0.314 -- 20.52 2560 -- --
180.41 0.63 4.95 0.125 0.521 -- -0.39 -- -0.197 15.3 -- -- -- --
180.88 0.63 4.96 0.117 0.521 -- -- -- -0.2 15.5 -- -- -- --
185.22 0.634 4.9 0.56 -- -0.804 -- -- 0.0401 -- -0.1062 9856 -- --
177.13 0.62 4.94 -- 0.498 -0.41 -- -- -0.152 15.3 11.37 4372 -- --
196.06 0.654 4.96 0.0954 -- -- -- -- -0.213 -- -- -- -- --
181.24 0.63 4.96 -- 0.518 -- -- -- -0.213 15.5 -- -- -- --
190.36 0.643 4.94 -- -- -0.497 -- -- -0.151 -- 8.939 4089 -- --
196.3 0.654 4.96 -- -- -- -- -- -0.224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.97 humidity 90 14400 > th dose dependent rect. 20 10
8 151.35 humidity 90 14400 > th dose dependent rect. 1 7
36 151.98 humidity 90 14400 > th dose dependent rect. 23 4
46 152.23 humidity 90 14400 > th dose dependent rect. 5 1
50 152.30 humidity 90 14400 > th dose dependent sin 9 NA
68 152.69 temperature 30 270 < th dose dependent rect. 21 22
76 152.82 humidity 60 43200 > th dose independent rect. 9 1
78 152.89 humidity 60 43200 < th dose independent rect. 9 1
81 152.91 humidity 80 43200 < th dose dependent rect. 9 1
84 152.92 humidity 60 43200 > th dose independent rect. 8 3
86 152.97 humidity 60 43200 < th dose independent rect. 8 3
88 152.99 humidity 70 43200 > th dose independent rect. 3 8
98 153.07 humidity 50 43200 < th dose independent rect. 16 1
99 153.07 radiation 30 43200 < th dose independent rect. 17 14
100 153.08 humidity 60 43200 < th dose independent rect. 5 7
101 153.08 humidity 70 43200 < th dose independent rect. 3 9
103 153.09 radiation 20 43200 > th dose dependent rect. 17 14
107 153.13 radiation 20 43200 > th dose dependent rect. 6 1
127 153.20 humidity 80 43200 < th dose dependent rect. 8 4
145 153.31 humidity 70 43200 < th dose dependent rect. 11 1
162 153.38 radiation 10 14400 < th dose dependent rect. 24 5
172 153.41 radiation 10 14400 < th dose dependent rect. 22 7
176 153.42 radiation 30 43200 < th dose independent rect. 22 9
177 153.43 radiation 30 43200 < th dose independent rect. 24 7
191 153.49 temperature 15 90 > th dose dependent rect. 2 21
192 153.49 temperature 15 720 > th dose dependent rect. 16 21
207 153.55 temperature 15 4320 < th dose dependent rect. 20 1
220 153.59 temperature 30 90 < th dose dependent rect. 23 22
227 153.62 humidity 50 43200 > th dose independent rect. 16 1
243 153.67 radiation 30 43200 < th dose independent rect. 6 1
246 153.68 humidity 50 43200 > th dose independent rect. 16 3
305 153.84 humidity 60 43200 > th dose independent rect. 19 19
311 153.86 humidity 60 43200 > th dose independent rect. 21 17
362 153.98 radiation 10 43200 < th dose independent rect. 5 1
363 153.98 radiation 10 43200 < th dose independent rect. 2 4
366 153.98 radiation 10 43200 < th dose independent rect. 22 8
418 154.07 humidity 70 43200 < th dose independent sin 4 NA
436 154.10 humidity 70 43200 < th dose dependent sin 3 NA
437 154.10 wind 7 43200 > th dose dependent rect. 19 1
464 154.16 humidity 60 43200 < th dose independent rect. 19 19
466 154.16 temperature 20 1440 > th dose dependent rect. 16 7
476 154.20 humidity 60 43200 < th dose independent rect. 21 17
498 154.25 humidity 60 43200 > th dose independent sin 6 NA
503 154.25 temperature 20 1440 > th dose dependent rect. 14 22
526 154.28 temperature 20 1440 > th dose dependent rect. 15 9
537 154.30 humidity 50 43200 > th dose independent rect. 15 15
540 154.30 temperature 15 4320 < th dose dependent rect. 12 10
544 154.30 temperature 20 1440 > th dose dependent rect. 7 21
559 154.32 wind 9 43200 < th dose independent rect. 19 1
590 154.34 temperature 20 1440 > th dose dependent rect. 1 23
592 154.35 radiation 1 14400 > th dose independent rect. 4 1
604 154.35 radiation 1 14400 > th dose dependent rect. 4 1
626 154.36 humidity 50 43200 > th dose independent rect. 16 18
640 154.37 humidity 50 43200 < th dose independent rect. 16 19
641 154.37 temperature 20 1440 > th dose dependent no NA NA
655 154.38 temperature 20 1440 > th dose dependent sin 16 NA
686 154.39 temperature 20 1440 > th dose dependent rect. 11 23
687 154.39 temperature 20 1440 > th dose dependent rect. 20 23
689 154.40 humidity 50 43200 > th dose independent rect. 16 12
715 154.41 humidity 70 43200 < th dose dependent rect. 17 21
717 154.41 temperature 20 1440 > th dose dependent rect. 18 23
719 154.42 humidity 50 43200 < th dose independent rect. 16 12
747 154.44 temperature 15 10 > th dose dependent rect. 2 22
751 154.45 humidity 50 43200 > th dose independent rect. 16 8
823 154.49 humidity 50 43200 < th dose independent rect. 15 15
860 154.51 humidity 50 43200 > th dose independent sin 12 NA
887 154.53 wind 9 43200 > th dose independent rect. 19 1
904 154.53 humidity 70 43200 < th dose dependent rect. 8 23
929 154.55 atmosphere 1005 43200 > th dose independent rect. 9 2
948 154.56 humidity 70 43200 < th dose dependent no NA NA
991 154.59 atmosphere 1005 43200 < th dose independent rect. 9 1