Os02g0271900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os02g0271900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.33 | 0.236 | 10.5 | -0.633 | 0.46 | 0.754 | -0.546 | -0.538 | -0.0647 | 16.3 | 25.44 | 738 | -- | -- |
| 25.76 | 0.236 | 10.5 | -0.477 | 0.472 | 0.72 | -0.625 | -- | -0.0126 | 16.4 | 25.5 | 738 | -- | -- |
| 26.15 | 0.238 | 10.5 | -0.643 | 0.46 | 0.744 | -- | -0.57 | -0.0652 | 16.4 | 25.5 | 738 | -- | -- |
| 26.69 | 0.241 | 10.5 | -0.493 | 0.457 | 0.728 | -- | -- | -0.021 | 16.3 | 25.33 | 739 | -- | -- |
| 31.11 | 0.26 | 10.5 | -0.672 | -- | 0.834 | -- | -0.631 | -0.0619 | -- | 25.7 | 544 | -- | -- |
| 42.52 | 0.306 | 10.5 | -0.283 | 0.669 | -- | -0.438 | -- | 0.252 | 18.3 | -- | -- | -- | -- |
| 42.99 | 0.307 | 10.5 | -0.278 | 0.667 | -- | -- | -- | 0.25 | 18.3 | -- | -- | -- | -- |
| 31.87 | 0.263 | 10.5 | -0.523 | -- | 0.801 | -- | -- | -0.0219 | -- | 25.8 | 542 | -- | -- |
| 32.54 | 0.266 | 10.5 | -- | 0.519 | 0.612 | -- | -- | 0.0698 | 16.7 | 25.4 | 745 | -- | -- |
| 66.11 | 0.38 | 10.4 | -0.296 | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
| 45.03 | 0.314 | 10.4 | -- | 0.671 | -- | -- | -- | 0.281 | 18.3 | -- | -- | -- | -- |
| 38.75 | 0.29 | 10.5 | -- | -- | 0.724 | -- | -- | 0.0565 | -- | 25.76 | 521 | -- | -- |
| 68.42 | 0.386 | 10.4 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.48 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 5 | 23.76 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 6 | 23.76 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 17 |
| 11 | 23.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 15 | 23.92 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 23 | 24.00 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 86 | 24.70 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 114 | 24.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 122 | 24.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 139 | 25.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 144 | 25.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 155 | 25.11 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 169 | 25.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 222 | 25.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 228 | 25.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 235 | 25.36 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 271 | 25.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 369 | 25.69 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 424 | 25.83 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 23 |
| 428 | 25.85 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 490 | 26.00 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 513 | 26.05 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 540 | 26.11 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 575 | 26.17 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 23 |
| 597 | 26.21 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 23 |
| 651 | 26.31 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 687 | 26.38 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 811 | 26.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 818 | 26.49 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 825 | 26.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 844 | 26.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 845 | 26.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 859 | 26.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 891 | 26.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 898 | 26.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 906 | 26.53 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |