BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0307200 Os04g0307200|AK070019
(681 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0307200 Similar to Cysteine string protein (CCCS1) 1328 0.0
Os02g0107000 Similar to U5 small nuclear ribonucleoprotein ... 93 5e-19
Os03g0743800 82 1e-15
Os05g0562300 Similar to DnaJ-like protein 69 2e-11
Os05g0334400 Heat shock protein DnaJ family protein 68 2e-11
AK103889 67 4e-11
Os03g0648400 Similar to DnaJ protein homolog (DNAJ-1) 67 5e-11
Os03g0787300 Similar to DnaJ homolog 66 8e-11
>Os04g0307200 Similar to Cysteine string protein (CCCS1)
Length = 681
Score = 1328 bits (3436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/681 (94%), Positives = 646/681 (94%)
Query: 1 MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHCRCSGCHRSGKYRKSIY 60
MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHCRCSGCHRSGKYRKSIY
Sbjct: 1 MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHCRCSGCHRSGKYRKSIY 60
Query: 61 KRISNFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEPYSILGLEPGASESDIKKSYR 120
KRISNFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEPYSILGLEPGASESDIKKSYR
Sbjct: 61 KRISNFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEPYSILGLEPGASESDIKKSYR 120
Query: 121 RLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENYEKYGHPDGRQGMQMGIALPK 180
RLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENYEKYGHPDGRQGMQMGIALPK
Sbjct: 121 RLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENYEKYGHPDGRQGMQMGIALPK 180
Query: 181 FLLNMDGASGGIMLLGIVGLCILLPLMIAVIYLSRSSKYTGNYVMHQTLSTYYYFMKPSL 240
FLLNMDGASGGIMLLGIVGLCILLPLMIAVIYLSRSSKYTGNYVMHQTLSTYYYFMKPSL
Sbjct: 181 FLLNMDGASGGIMLLGIVGLCILLPLMIAVIYLSRSSKYTGNYVMHQTLSTYYYFMKPSL 240
Query: 241 APSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLDLKNIRTEQAKFWKQHPSL 300
APSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLDLKNIRTEQAKFWKQHPSL
Sbjct: 241 APSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLDLKNIRTEQAKFWKQHPSL 300
Query: 301 VKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVKIALLPRSPHGFGWLRPAI 360
VKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVKIALLPRSPHGFGWLRPAI
Sbjct: 301 VKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVKIALLPRSPHGFGWLRPAI 360
Query: 361 GVIELSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVVKKIARKKIRSFQEFCDMP 420
GVIELSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVVKKIARKKIRSFQEFCDMP
Sbjct: 361 GVIELSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVVKKIARKKIRSFQEFCDMP 420
Query: 421 VEERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCETEGEEGIQEGDVVTMYAWVSL 480
VEERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCETEGEEGIQEGDVVTMYAWVSL
Sbjct: 421 VEERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCETEGEEGIQEGDVVTMYAWVSL 480
Query: 481 HRRNGLTAALPHAPSFPFHKEENFWLLLADAASNEVWLSQKVSFMDETTAITAASKAIQE 540
HRRNGLTAALPHAPSFPFHKEENFWLLLADAASNEVWLSQKVSFMDETTAITAASKAIQE
Sbjct: 481 HRRNGLTAALPHAPSFPFHKEENFWLLLADAASNEVWLSQKVSFMDETTAITAASKAIQE 540
Query: 541 TQEALGASAKEIGIAIREAVDRVKKGSRLVMGKFQAPAEGTHNLTSFCLCDAWIGCDTKT 600
TQEALGASAKEIGIAIREAVDRVKKGSRLVMGKFQAPAEGTHNLTSFCLCDAWIGCDTKT
Sbjct: 541 TQEALGASAKEIGIAIREAVDRVKKGSRLVMGKFQAPAEGTHNLTSFCLCDAWIGCDTKT 600
Query: 601 SLKLKVLKRSRAGTRGHVAEEGPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
SLKLKVLKRSRAGTRGHVAEEGPVA
Sbjct: 601 SLKLKVLKRSRAGTRGHVAEEGPVAEDGIEEEEEEEEEEYDDYESEYSDDEEDEKSKGKG 660
Query: 661 KVANGVAHQKANSDIDSGSDD 681
KVANGVAHQKANSDIDSGSDD
Sbjct: 661 KVANGVAHQKANSDIDSGSDD 681
>Os02g0107000 Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase (EC
3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
(Activating signal cointegrator 1 complex subunit 3-like
1)
Length = 381
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 44/322 (13%)
Query: 223 YVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLD 282
Y+ + T+ + + ++++ A+EY E+P R +++ ++KL R
Sbjct: 64 YISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQR------ 117
Query: 283 LKNIRTEQAKFWKQHPSLVKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVK 342
E+ K+ H VK L+QAH + + + L D R +L A RLL +V
Sbjct: 118 ---FSIEKPKYGDPH---VKANALLQAHFSRHT--ILGNLAADQREILLSAHRLLQAMVD 169
Query: 343 IALLPRSPHGFGWLRPAIGVIELSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVV 402
+ GWL A+ +ELSQ + Q G + + LQLPHFT+ +
Sbjct: 170 VI------SSNGWLTLALNAMELSQMVTQ-----------GMWDRDSVLLQLPHFTKELA 212
Query: 403 KKIARKK---IRSFQEFCDMPVEERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCE 459
++ + I S + +M ++E LL Q S+ QD+ + P+ VD+ E
Sbjct: 213 RRCQENEGRPIESIFDLAEMSIDEMRDLLQQ----SNPQLQDIIEFFKRFPN--VDMAYE 266
Query: 460 TEGEEGIQEGDVVTMYAWVSLHRRNGLTAALP-HAPSFPFHKEENFWLLLADAASNEVWL 518
+ I+ GD VT+ + N + P HAP +P KEE +WL++ D+++N++
Sbjct: 267 VREGDDIRAGDNVTVQVTLERDMTNLPSEVGPVHAPRYPKPKEEGWWLVIGDSSTNQLLA 326
Query: 519 SQKVSFMDETTA---ITAASKA 537
++V+ TAAS+A
Sbjct: 327 IKRVALQKRARVKLEFTAASEA 348
>Os03g0743800
Length = 2144
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 161/392 (41%), Gaps = 90/392 (22%)
Query: 223 YVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLD 282
YV + T+ + + ++++ A+EY ++P R + + +++L R +
Sbjct: 1829 YVTYTTIERFSSMLTQKTKLKGLLEILASASEYADLPSRPGEQKSIERLVHHQRFSVE-- 1886
Query: 283 LKNIRTEQAKFWKQHPSLVKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVK 342
K +R + VK L+Q H + + + L D R +L A RLL L+
Sbjct: 1887 -KKVRYDDPH--------VKANALLQCHFSRRT--VEGDLAADQREILLPAHRLLQALID 1935
Query: 343 IALLPRSPHGFGWLRPAIGVIELSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVV 402
+ GWL A+ +ELSQ + Q G + + LQLPHFTE +
Sbjct: 1936 VI------SSNGWLTLALNAMELSQMVTQ-----------GMWDRDSVLLQLPHFTEELA 1978
Query: 403 KKIAR---KKIRSFQEFCDMPVEERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCE 459
++ K I + + +M E LL L QD+ L P+I++ +
Sbjct: 1979 RRCQENEGKAIETIFDLAEMSTHEMQDLLQ----LPSSQLQDIVGFLRRFPNIDMAFQ-- 2032
Query: 460 TEGEEGIQEGDVVTMYAWVSLHRRNG---LTAALP-HAPSFPFHKEENFWLLLADAASNE 515
+ EGD ++ V+L R + A P HAP FP KEE +WL++ D ++++
Sbjct: 2033 ------VLEGDGGSVTVQVTLEREMADLLQSEAGPVHAPRFPKPKEEGWWLVIGDRSTDQ 2086
Query: 516 VWLSQKVSFMDETTAITAASKAIQETQEALGASAKEIGIAIREAVDRVKKGSRLVMGKFQ 575
+ ++V +++K +R+ + +F
Sbjct: 2087 LLAIKRV---------------------------------------KLQKRARVKL-EFA 2106
Query: 576 APAE-GTHNLTSFCLCDAWIGCDTKTSLKLKV 606
APAE G + + + D+++GCD + + V
Sbjct: 2107 APAEAGRKDYMVYLMSDSYLGCDQEYEFAVDV 2138
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 101 YSILGLEPGASESDIKKSYRRLSIQYHPDKNPD--PEAHKYFVEFISKAYQALTDPVSRE 158
Y ILG++ AS+ D+KK+YR+L++++HPDKNP+ EA F + IS+AY+ L+DP R
Sbjct: 6 YKILGVDKAASDDDLKKAYRKLAMKWHPDKNPNNKKEAENKFKQ-ISEAYEVLSDPQKRA 64
Query: 159 NYEKYGH 165
Y++YG
Sbjct: 65 VYDQYGE 71
>Os05g0334400 Heat shock protein DnaJ family protein
Length = 447
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 101 YSILGLEPGASESDIKKSYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENY 160
YS LG+ AS+S+IK +YR+L+ YHPD N DP A + F + IS AY+ L+D R Y
Sbjct: 92 YSTLGVSRNASKSEIKSAYRKLARSYHPDVNKDPGAEQKFKD-ISNAYEVLSDDEKRSIY 150
Query: 161 EKYGHPDGRQGMQMGIA 177
+KYG G +G MG
Sbjct: 151 DKYGEA-GLKGAGMGTG 166
>AK103889
Length = 185
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 101 YSILGLEPGASESDIKKSYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENY 160
Y +LG+ AS+ ++KK+YR+ +I+ HPDK DPE K +S+AY+ LTDP R+ Y
Sbjct: 14 YEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKE----LSQAYEVLTDPEKRDIY 69
Query: 161 EKYGHPDGRQGMQMG 175
++YG + GM G
Sbjct: 70 DQYGEDALKDGMGGG 84
>Os03g0648400 Similar to DnaJ protein homolog (DNAJ-1)
Length = 417
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 101 YSILGLEPGASESDIKKSYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENY 160
Y ILG+ AS+ D+KK+YR+ +I+ HPDK DPE K +++AY+ L+DP RE Y
Sbjct: 15 YEILGVPKTASQDDLKKAYRKAAIKNHPDKGGDPEKFKE----LAQAYEVLSDPEKREIY 70
Query: 161 EKYGHPDGRQGMQMG 175
++YG ++GM G
Sbjct: 71 DQYGEDALKEGMGGG 85
>Os03g0787300 Similar to DnaJ homolog
Length = 417
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 101 YSILGLEPGASESDIKKSYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENY 160
Y +LG+ AS+ D+KK+YR+ +I+ HPDK DPE K +++AY+ L+DP RE Y
Sbjct: 15 YEVLGVPKDASQDDLKKAYRKAAIKNHPDKGGDPEKFKE----LAQAYEVLSDPEKREIY 70
Query: 161 EKYGHPDGRQGMQMGIAL 178
++YG ++GM G +
Sbjct: 71 DQYGEDALKEGMGPGGGM 88
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,013,148
Number of extensions: 834943
Number of successful extensions: 2215
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 11
Length of query: 681
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 573
Effective length of database: 11,396,689
Effective search space: 6530302797
Effective search space used: 6530302797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)