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Os04g0307200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cysteine string protein (CCCS1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0159) R2 : 0.0102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0729 (0.0336) R2dN8 : 0.0132 R2N8 : 0.0102
σ : 0.3
deviance : 41.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.12 0.2 12 0.326 0.521 1.48 -0.0241 -4.09 0.149 21.7 0.1324 626 -- --
20.77 0.212 12 0.333 0.533 0.64 0.0678 -- 0.171 21.5 0.5 180 -- --
18.12 0.198 12 0.327 0.521 1.48 -- -4.09 0.149 21.7 0.1405 625 -- --
20 0.208 12 0.369 0.512 0.343 -- -- 0.132 21.6 0.5 673 -- --
34.02 0.272 12 0.32 -- 1.47 -- -3.67 0.149 -- 0.02977 699 -- --
20.84 0.214 12 0.416 0.519 -- 0.109 -- 0.12 21.7 -- -- -- --
20.88 0.214 12 0.412 0.519 -- -- -- 0.12 21.7 -- -- -- --
34.42 0.273 12 0.37 -- 0.673 -- -- 0.132 -- 1.063 514 -- --
21.39 0.215 12 -- 0.528 0.279 -- -- 0.134 21.8 1.001 47520 -- --
36.82 0.284 12 0.416 -- -- -- -- 0.119 -- -- -- -- --
25.35 0.236 12 -- 0.519 -- -- -- 0.0741 21.7 -- -- -- --
36.55 0.282 12 -- -- 0.256 -- -- 0.135 -- 2.677 35327 -- --
41.39 0.3 12 -- -- -- -- -- 0.0729 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.14 radiation 1.0 30 > th dose independent sin 11 NA
3 17.14 temperature 15.0 10 > th dose dependent rect. 5 16
7 17.25 radiation 1.0 90 > th dose independent rect. 16 15
9 17.29 humidity 50.0 270 > th dose dependent rect. 7 20
10 17.31 temperature 20.0 270 > th dose independent rect. 3 15
31 17.47 radiation 1.0 90 < th dose independent sin 12 NA
32 17.47 radiation 1.0 90 < th dose dependent sin 12 NA
38 17.52 radiation 1.0 270 < th dose dependent rect. 5 22
50 17.58 humidity 60.0 30 > th dose dependent rect. 11 17
63 17.63 humidity 50.0 720 > th dose dependent rect. 17 2
67 17.64 humidity 90.0 4320 > th dose dependent rect. 2 1
81 17.67 temperature 15.0 1440 > th dose independent rect. 8 9
118 17.74 humidity 80.0 1440 > th dose dependent rect. 11 2
127 17.76 temperature 15.0 4320 > th dose independent rect. 7 1
130 17.77 radiation 1.0 270 < th dose independent rect. 5 22
137 17.79 wind 7.0 14400 < th dose independent rect. 15 1
138 17.79 temperature 30.0 720 < th dose independent rect. 17 2
139 17.79 temperature 20.0 10 > th dose independent rect. 5 14
165 17.83 humidity 80.0 1440 > th dose dependent rect. 9 5
178 17.86 temperature 10.0 43200 > th dose independent rect. 8 9
184 17.87 wind 7.0 14400 > th dose independent rect. 15 1
195 17.89 radiation 1.0 1440 < th dose independent rect. 9 3
196 17.89 radiation 1.0 1440 < th dose dependent rect. 9 3
206 17.90 radiation 1.0 270 < th dose independent rect. 8 19
237 17.94 wind 5.0 14400 > th dose dependent rect. 15 1
249 17.97 radiation 1.0 1440 > th dose independent rect. 9 3
259 17.98 radiation 1.0 1440 > th dose independent rect. 9 1
260 17.98 radiation 1.0 1440 > th dose independent rect. 8 5
266 17.99 temperature 30.0 720 < th dose independent rect. 17 10
271 18.00 humidity 60.0 720 > th dose independent rect. 17 2
274 18.00 precipitation 0.1 720 > th dose dependent rect. 1 19
279 18.01 temperature 25.0 1440 > th dose dependent rect. 15 1
288 18.02 precipitation 0.1 720 > th dose independent rect. 5 23
299 18.04 humidity 50.0 270 > th dose independent rect. 6 21
313 18.05 temperature 20.0 270 > th dose dependent rect. 4 2
314 18.05 temperature 15.0 270 > th dose dependent rect. 3 4
333 18.07 precipitation 0.1 720 > th dose independent rect. 24 20
338 18.07 humidity 80.0 1440 < th dose dependent rect. 15 4
352 18.08 humidity 80.0 1440 < th dose dependent rect. 18 1
366 18.09 radiation 1.0 1440 < th dose dependent rect. 8 8
376 18.10 precipitation 0.1 720 > th dose dependent sin 1 NA
380 18.10 temperature 15.0 270 > th dose dependent rect. 2 6
381 18.10 humidity 90.0 10 < th dose dependent rect. 16 15
392 18.11 radiation 1.0 30 > th dose independent rect. 16 19
421 18.13 wind 5.0 90 < th dose dependent rect. 3 8
453 18.15 precipitation 0.1 720 > th dose independent rect. 9 22
467 18.16 temperature 20.0 10 > th dose dependent rect. 5 2
473 18.17 precipitation 0.1 720 > th dose independent no NA NA
474 18.17 precipitation 0.1 720 < th dose independent no NA NA
475 18.17 humidity 50.0 43200 > th dose independent rect. 22 7
479 18.17 precipitation 0.1 720 > th dose independent rect. 13 22
484 18.17 precipitation 0.1 720 > th dose independent rect. 19 23
486 18.17 precipitation 0.1 720 < th dose dependent no NA NA
487 18.17 temperature 10.0 1440 > th dose dependent rect. 15 1
490 18.17 humidity 80.0 720 < th dose dependent rect. 18 4
495 18.17 radiation 1.0 90 > th dose dependent rect. 17 14
510 18.18 precipitation 0.1 720 > th dose independent rect. 17 23
527 18.19 precipitation 0.1 1440 > th dose independent rect. 2 1
534 18.19 precipitation 0.1 1440 > th dose dependent rect. 2 1
545 18.19 precipitation 0.1 720 > th dose dependent rect. 5 23
547 18.20 wind 9.0 43200 < th dose independent rect. 20 1
553 18.20 humidity 80.0 270 > th dose independent rect. 8 18
555 18.20 radiation 10.0 1440 > th dose independent rect. 11 20
559 18.20 precipitation 0.1 720 > th dose dependent no NA NA
572 18.20 precipitation 0.1 720 > th dose dependent rect. 12 23
575 18.21 wind 5.0 43200 > th dose independent rect. 19 1
576 18.21 radiation 10.0 1440 > th dose independent rect. 11 7
610 18.21 precipitation 0.1 720 > th dose dependent rect. 9 23
612 18.21 precipitation 0.1 720 > th dose dependent rect. 17 23
613 18.21 precipitation 0.1 720 > th dose dependent rect. 19 23
614 18.22 temperature 15.0 1440 > th dose independent rect. 20 9
616 18.22 humidity 80.0 1440 < th dose independent rect. 7 13
633 18.22 temperature 20.0 720 < th dose dependent rect. 4 12
645 18.23 wind 9.0 43200 > th dose independent rect. 20 1
664 18.23 radiation 1.0 1440 > th dose independent rect. 8 22
665 18.23 radiation 1.0 1440 < th dose independent rect. 8 22
667 18.23 wind 7.0 43200 > th dose dependent rect. 20 1
679 18.24 precipitation 0.1 720 > th dose independent sin 1 NA
680 18.24 atmosphere 1015.0 1440 < th dose independent rect. 17 2
687 18.24 precipitation 0.1 720 > th dose independent rect. 9 20
708 18.24 wind 9.0 90 < th dose dependent rect. 4 14
710 18.24 humidity 80.0 1440 < th dose dependent rect. 15 18
713 18.25 wind 5.0 43200 < th dose independent rect. 19 1
716 18.25 humidity 50.0 4320 > th dose independent rect. 12 5
717 18.25 humidity 70.0 720 > th dose independent rect. 17 10
720 18.25 precipitation 0.1 720 > th dose independent rect. 5 15
746 18.26 radiation 10.0 1440 > th dose independent rect. 11 5
751 18.26 humidity 80.0 10 > th dose independent rect. 11 18
760 18.26 temperature 20.0 720 < th dose dependent sin 2 NA
766 18.26 wind 7.0 43200 > th dose dependent rect. 15 6
781 18.27 radiation 10.0 1440 > th dose independent sin 19 NA
788 18.27 precipitation 0.1 270 < th dose independent rect. 3 15
791 18.27 radiation 1.0 1440 < th dose independent rect. 7 20
811 18.27 precipitation 0.1 270 < th dose dependent rect. 3 15
821 18.28 humidity 80.0 720 < th dose independent rect. 19 2
826 18.28 radiation 1.0 1440 > th dose independent rect. 7 12
827 18.28 radiation 1.0 1440 < th dose independent rect. 7 12
853 18.28 radiation 10.0 1440 < th dose dependent sin 17 NA
876 18.29 humidity 80.0 1440 < th dose independent rect. 17 3
878 18.29 temperature 15.0 1440 > th dose independent rect. 22 7
909 18.30 humidity 60.0 43200 > th dose independent rect. 1 3
910 18.30 wind 7.0 43200 > th dose independent rect. 15 7
918 18.30 humidity 80.0 1440 > th dose independent rect. 7 14
936 18.30 temperature 25.0 1440 > th dose dependent rect. 6 1
940 18.30 wind 5.0 14400 > th dose dependent rect. 12 4
941 18.30 wind 7.0 43200 > th dose dependent rect. 15 4
952 18.30 radiation 10.0 270 < th dose dependent rect. 16 11
953 18.30 radiation 10.0 1440 < th dose dependent rect. 14 12
960 18.30 temperature 10.0 720 > th dose dependent rect. 19 20
969 18.31 humidity 90.0 4320 > th dose independent rect. 2 3
972 18.31 wind 7.0 43200 < th dose independent rect. 15 7
989 18.31 humidity 80.0 90 > th dose independent rect. 10 18