FiT-DB / Search/ Help/ Sample detail
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Os02g0107000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD) (Activating signal cointegrator 1 complex subunit 3-like 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.97 | 0.301 | 13.5 | 2.48 | 0.694 | -0.87 | 0.295 | 2.43 | 0.774 | 19.6 | 24.03 | 1435 | -- | -- |
| 44.92 | 0.312 | 13.5 | 1.9 | 0.701 | -0.673 | 0.324 | -- | 0.717 | 19.6 | 22.63 | 11258 | -- | -- |
| 41.16 | 0.299 | 13.5 | 2.47 | 0.689 | -0.877 | -- | 2.4 | 0.783 | 19.7 | 23.69 | 1379 | -- | -- |
| 42.95 | 0.305 | 13.6 | 1.79 | 0.678 | -0.67 | -- | -- | 0.533 | 19.6 | 26 | 5706 | -- | -- |
| 66.69 | 0.38 | 13.4 | 2.46 | -- | -0.885 | -- | 2.37 | 0.784 | -- | 23.64 | 1384 | -- | -- |
| 59.97 | 0.363 | 13.6 | 1.54 | 0.703 | -- | 0.316 | -- | 0.471 | 19.3 | -- | -- | -- | -- |
| 60.24 | 0.363 | 13.6 | 1.53 | 0.704 | -- | -- | -- | 0.472 | 19.2 | -- | -- | -- | -- |
| 67.77 | 0.383 | 13.5 | 1.77 | -- | -0.679 | -- | -- | 0.509 | -- | 26.3 | 5723 | -- | -- |
| 118.08 | 0.506 | 13.6 | -- | 0.694 | -0.343 | -- | -- | 0.28 | 19.3 | 28.6 | 5997 | -- | -- |
| 86.49 | 0.435 | 13.6 | 1.52 | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
| 122.29 | 0.517 | 13.6 | -- | 0.689 | -- | -- | -- | 0.301 | 19.4 | -- | -- | -- | -- |
| 141.83 | 0.555 | 13.6 | -- | -- | -0.325 | -- | -- | 0.232 | -- | 30 | 5729 | -- | -- |
| 147.59 | 0.567 | 13.6 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 132 | 39.71 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 306 | 40.75 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 347 | 40.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 379 | 40.96 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 390 | 40.98 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 391 | 40.98 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 409 | 41.03 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 441 | 41.10 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 461 | 41.15 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 465 | 41.16 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 518 | 41.23 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 554 | 41.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 637 | 41.56 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 696 | 41.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 811 | 41.95 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 824 | 41.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 851 | 42.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 880 | 42.10 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 908 | 42.17 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 976 | 42.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 977 | 42.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 988 | 42.33 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 5 |
