BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0107000 Os02g0107000|AK059539
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0107000 Similar to U5 small nuclear ribonucleoprotein ... 767 0.0
Os03g0743800 616 e-177
Os02g0108700 Sec63 domain containing protein 348 4e-96
AK110096 276 2e-74
Os03g0213400 Similar to RNA helicase 206 2e-53
Os04g0307200 Similar to Cysteine string protein (CCCS1) 91 1e-18
>Os02g0107000 Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase (EC
3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
(Activating signal cointegrator 1 complex subunit 3-like
1)
Length = 381
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/381 (97%), Positives = 371/381 (97%)
Query: 1 MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA 60
MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA
Sbjct: 1 MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA 60
Query: 61 XXXXXXXXXXERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI 120
ERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI
Sbjct: 61 SYYYISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI 120
Query: 121 EKPKYGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTLA 180
EKPKYGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTLA
Sbjct: 121 EKPKYGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTLA 180
Query: 181 LNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMRDL 240
LNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMRDL
Sbjct: 181 LNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMRDL 240
Query: 241 LQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPSEVGPVH 300
LQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPSEVGPVH
Sbjct: 241 LQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPSEVGPVH 300
Query: 301 APRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLMSD 360
APRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLMSD
Sbjct: 301 APRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLMSD 360
Query: 361 SYLGCDQEYEFTVDVMDAGGD 381
SYLGCDQEYEFTVDVMDAGGD
Sbjct: 361 SYLGCDQEYEFTVDVMDAGGD 381
>Os03g0743800
Length = 2144
Score = 616 bits (1589), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/383 (78%), Positives = 335/383 (87%), Gaps = 6/383 (1%)
Query: 1 MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA 60
MYRRL KNPNYYNLQ VSHRH+S+HLSELVETVLNDLES+ C+AIEE++YLK LNLGLIA
Sbjct: 1766 MYRRLAKNPNYYNLQDVSHRHVSEHLSELVETVLNDLESTNCLAIEENIYLKTLNLGLIA 1825
Query: 61 XXXXXXXXXXERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI 120
ERFSSMLTQKTK+KGLLEILASASEYA+LPSRPGE+ IE+LV HQRFS+
Sbjct: 1826 SYYYVTYTTIERFSSMLTQKTKLKGLLEILASASEYADLPSRPGEQKSIERLVHHQRFSV 1885
Query: 121 EKP-KYGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTL 179
EK +Y DPHVKANALLQ HFSR T+ G+LAADQREILL AHRLLQA++DVISSNGWLTL
Sbjct: 1886 EKKVRYDDPHVKANALLQCHFSRRTVEGDLAADQREILLPAHRLLQALIDVISSNGWLTL 1945
Query: 180 ALNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMRD 239
ALNAMELSQMVTQGMWDRDSVLLQLPHFT+ELARRCQENEG+ IE+IFDLAEMS EM+D
Sbjct: 1946 ALNAMELSQMVTQGMWDRDSVLLQLPHFTEELARRCQENEGKAIETIFDLAEMSTHEMQD 2005
Query: 240 LLQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTN-LPSEVGP 298
LLQ + QLQDI+ F +RFPN+DMA++V EGD G +VTVQVTLER+M + L SE GP
Sbjct: 2006 LLQLPSSQLQDIVGFLRRFPNIDMAFQVLEGD----GGSVTVQVTLEREMADLLQSEAGP 2061
Query: 299 VHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLM 358
VHAPR+PKPKEEGWWLVIGD ST+QLLAIKRV LQKRARVKLEF A +EAGRK+YM+YLM
Sbjct: 2062 VHAPRFPKPKEEGWWLVIGDRSTDQLLAIKRVKLQKRARVKLEFAAPAEAGRKDYMVYLM 2121
Query: 359 SDSYLGCDQEYEFTVDVMDAGGD 381
SDSYLGCDQEYEF VDV DAGGD
Sbjct: 2122 SDSYLGCDQEYEFAVDVKDAGGD 2144
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 31/374 (8%)
Query: 1 MYRRLTKNPNYYNLQG---VSHRHLSDHLSELVETVLNDLESSKCVAIEEDM-YLKPLNL 56
+Y R+ +NP Y L + L + +LV N L+ + + + Y + +L
Sbjct: 929 LYIRMLRNPTLYGLPADIMETDNTLDERRVDLVHAAANILDWNNLIKYDRKTGYFQVTDL 988
Query: 57 GLIAXXXXXXXXXXERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQ 116
G IA ++ L L + + + E+ + R E+ + KL
Sbjct: 989 GRIASYYYVSHRTISTYNECLKPTMGDIELCRLFSLSEEFKYVSVRQDEKMELAKLFNCV 1048
Query: 117 RFSIEKPKYGDPHVKANALLQAHFSRHTILG-NLAADQREILLSAHRLLQAMVDVISSNG 175
+ K +P K N LLQA+ SR + G +L++D I +A RLL+A+ +++ G
Sbjct: 1049 PIPV-KESLDEPSAKINVLLQAYISRLELEGLSLSSDMVYIRQNAGRLLRALFEIVLKRG 1107
Query: 176 WLTLALNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSID 235
W LA A+ L +M+ + +W+ L Q P KE+ + ++ E E FDL+ I
Sbjct: 1108 WAQLAEKALNLCKMIDKHIWNVQIPLHQFPSIPKEILMKLEKKE-LAWERYFDLSSQEIG 1166
Query: 236 EMRDLLQQSNPQL-QDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPS 294
E+ NP++ + + + P ++++ V+ G +T+ + D
Sbjct: 1167 EL-----IRNPKMGMQLHKCIHQLPKLNLSAHVQPITPTVLGFELTITADFQWD------ 1215
Query: 295 EVGPVHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKR---ARVKLEFTAA-SEAGR 350
+H Y +P +WL++ D+ + +L + L+K+ L FT E
Sbjct: 1216 --DELHG--YVEP----FWLIVEDNGGDNILHHEYFMLKKQYVDEDHTLNFTVPIYEPLP 1267
Query: 351 KEYMIYLMSDSYLG 364
+Y I ++SD +LG
Sbjct: 1268 PQYFIRVVSDKWLG 1281
>Os02g0108700 Sec63 domain containing protein
Length = 180
Score = 348 bits (893), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/215 (81%), Positives = 177/215 (82%), Gaps = 35/215 (16%)
Query: 167 MVDVISSNGWLTLALNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESI 226
MVDVISSNGWLTLALNAMELSQMVTQG+WDRDSVLLQLPHFTKELARRCQENEGRPIESI
Sbjct: 1 MVDVISSNGWLTLALNAMELSQMVTQGIWDRDSVLLQLPHFTKELARRCQENEGRPIESI 60
Query: 227 FDLAEMSIDEMRDLLQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLE 286
FDLAEMSIDEMRDLLQ SNPQLQDIIEFFKRFPNVDMAYE VTLE
Sbjct: 61 FDLAEMSIDEMRDLLQLSNPQLQDIIEFFKRFPNVDMAYE----------------VTLE 104
Query: 287 RDMTNLPSEVGPVHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAAS 346
RDMTNLPSEVGPVHAPRYPKPKEEGWWL KRARVKLEFTAAS
Sbjct: 105 RDMTNLPSEVGPVHAPRYPKPKEEGWWL-------------------KRARVKLEFTAAS 145
Query: 347 EAGRKEYMIYLMSDSYLGCDQEYEFTVDVMDAGGD 381
EAGRKEYMIYLMSD YLG DQEYEFTVDVMDAGGD
Sbjct: 146 EAGRKEYMIYLMSDYYLGRDQEYEFTVDVMDAGGD 180
>AK110096
Length = 1315
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/385 (41%), Positives = 239/385 (62%), Gaps = 14/385 (3%)
Query: 1 MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA 60
MYRRL +NP YN QG S +H+ D+LSELVET L DLE+SKC+AIE++M + PLNLG+IA
Sbjct: 921 MYRRLQQNPQAYNCQGKSMQHIGDYLSELVETTLADLENSKCIAIEDEMDVSPLNLGMIA 980
Query: 61 XXXXXXXXXXERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI 120
+ F+ L KTK++G+LEI++SA+E+ +LP R E+ +++L +
Sbjct: 981 SYYNVSYVTIDVFNMSLKDKTKLRGMLEIVSSAAEFEDLPIRQHEDVLLQRLYDRLPLKL 1040
Query: 121 EKPKYGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTLA 180
++ P+ K LLQAHF+R T+ +L ADQR +L LL A VDV+SSN +L A
Sbjct: 1041 DRLNLLSPYHKVYILLQAHFARLTLPVDLEADQRIVLGKVLNLLSACVDVMSSNAYLN-A 1099
Query: 181 LNAMELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSID----E 236
+ AMELSQMV Q +WD+DSVL Q+PHF+ E+ RC+ R +E +F L+++ D E
Sbjct: 1100 IVAMELSQMVVQAVWDKDSVLRQVPHFSAEVIERCR---ARGVEDVFGLSDLLADLSEVE 1156
Query: 237 MRDLLQQSNPQLQDIIEFFKRFPNVDMAYEVREG-DDIRAGDNVTVQVTLERDMTNLPSE 295
+LLQ Q + F FP ++++Y + +++ A D +TV+VTL++D +
Sbjct: 1157 RDELLQMDKKQTARVAAFVNAFPYIELSYSIETPREEMNASDPITVRVTLDKDDEDDEEG 1216
Query: 296 VGPVHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYM- 354
+ V + YP K WW+VIGD +T LLAIK+V ++K ++ LE T GR + +
Sbjct: 1217 LV-VQSAFYPARKLVQWWVVIGDPATKNLLAIKKVTVRKTVQLDLEVTLPQ--GRHDRLK 1273
Query: 355 IYLMSDSYLGCDQEYEF-TVDVMDA 378
++L+ DSYLG D+E +DVM+
Sbjct: 1274 MWLVCDSYLGADREVNIEPLDVMEG 1298
>Os03g0213400 Similar to RNA helicase
Length = 1139
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 203/374 (54%), Gaps = 14/374 (3%)
Query: 1 MYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIA 60
+YRRL NP YY L+ L+ +LS LVET DLE S C+ ++ D +K L LG IA
Sbjct: 770 LYRRLVVNPAYYGLEDTETYTLNCYLSRLVETTFEDLEDSGCIKVD-DHSVKYLILGKIA 828
Query: 61 XXXXXXXXXXERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSI 120
F + + T ++ + IL++++E+ ELP R E++ L +S+
Sbjct: 829 SQYYLSYLTVSMFGTNIGPNTSLEAFVHILSASAEFDELPVRHNEDNLNRTLCGKVPYSV 888
Query: 121 EKPKYGDPHVKANALLQAHFSRHTI-LGNLAADQREILLSAHRLLQAMVDVISSNGWLTL 179
++ DPHVKAN L QAHFSR + + + D + +L + R++QAM+D+ +++GWL+
Sbjct: 889 DQQHLDDPHVKANLLFQAHFSRAELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSS 948
Query: 180 ALNAMELSQMVTQGMW-DRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMR 238
AL M L QM+ QG+W +RDS L LP L + GR + +I L +S +E+
Sbjct: 949 ALTCMHLLQMIIQGLWFERDSSLWMLPSMNDNLLDHLK---GRGVSTIPALLGLSREELH 1005
Query: 239 DLLQQSNPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPSEVGP 298
LLQ + ++ + + FP VD+ +++ D ++ + +++ M +
Sbjct: 1006 RLLQPFSA--SELYQDLQHFPCVDVKLKLQNEDKDQSRPPI---LSIRLQMKDARRSTSR 1060
Query: 299 VHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKR-ARVKLEFTAASEAGRKEYMIYL 357
+PR+PK K+E WWLV+G+ +++L +KR+ R ++E A + +E + L
Sbjct: 1061 AFSPRFPKAKQEAWWLVLGNIRSSELYGLKRINFMDRVVNTRMELPAMFDI--QETKLIL 1118
Query: 358 MSDSYLGCDQEYEF 371
+SDSYLG DQEY
Sbjct: 1119 VSDSYLGFDQEYSL 1132
>Os04g0307200 Similar to Cysteine string protein (CCCS1)
Length = 681
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 44/300 (14%)
Query: 86 LLEILASASEYAELPSRPGEEDFIEKLVRHQR---------FSIEKPKYGDPH---VKAN 133
++++ A+EY E+P R +++ ++KL R E+ K+ H VK
Sbjct: 245 VMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVRSELNLDLKNIRTEQAKFWKQHPSLVKME 304
Query: 134 ALLQAHFSRHT--ILGNLAADQREILLSAHRLLQAMVDVI------SSNGWLTLALNAME 185
L+QAH + + + L D R +L A RLL +V + GWL A+ +E
Sbjct: 305 LLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELVKIALLPRSPHGFGWLRPAIGVIE 364
Query: 186 LSQMVTQ-----------GMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSI 234
LSQ + Q G + + LQLPHFT+ + ++ + I S + +M +
Sbjct: 365 LSQNIIQAVPLSARKASGGNSEGIAPFLQLPHFTETVVKKIARKK---IRSFQEFCDMPV 421
Query: 235 DEMRDLLQQ----SNPQLQDIIEFFKRFPN--VDMAYEVREGDDIRAGDNVTVQVTLERD 288
+E LL Q S+ QD+ + P+ VD+ E + I+ GD VT+ +
Sbjct: 422 EERATLLTQVAGLSDEGAQDVELVLEMIPSIEVDIKCETEGEEGIQEGDVVTMYAWVSLH 481
Query: 289 MTNLPSEVGPVHAPRYPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEA 348
N + P HAP +P KEE +WL++ D+++N++ ++V+ TAAS+A
Sbjct: 482 RRNGLTAALP-HAPSFPFHKEENFWLLLADAASNEVWLSQKVSFMDETTA---ITAASKA 537
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,783,839
Number of extensions: 442867
Number of successful extensions: 1088
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 7
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)