BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0293300 Os04g0293300|AK111082
(77 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0293300 Similar to Tropinone reductase-I (EC 1.1.1.206... 150 1e-37
Os04g0269100 Similar to Tropinone reductase-II (EC 1.1.1.23... 125 5e-30
Os11g0443700 Similar to Short chain alcohol dehydrogenase-like 110 3e-25
Os11g0438700 Similar to Tropinone reductase-I (EC 1.1.1.206... 107 2e-24
Os11g0438000 Similar to Short chain alcohol dehydrogenase-like 92 9e-20
Os03g0268900 Similar to Short chain alcohol dehydrogenase-like 87 2e-18
Os11g0654400 Similar to Short chain alcohol dehydrogenase-like 83 4e-17
Os11g0652900 Similar to Short chain alcohol dehydrogenase-like 83 4e-17
Os01g0931000 Glucose/ribitol dehydrogenase family protein 81 2e-16
Os01g0930900 Similar to Short chain alcohol dehydrogenase-like 81 2e-16
>Os04g0293300 Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase)
Length = 77
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MSTSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW 60
MSTSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW
Sbjct: 1 MSTSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW 60
Query: 61 RAKKLAVTVSVRRVGAR 77
RAKKLAVTVSVRRVGAR
Sbjct: 61 RAKKLAVTVSVRRVGAR 77
>Os04g0269100 Similar to Tropinone reductase-II (EC 1.1.1.236) (TR-II)
Length = 175
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 67/76 (88%)
Query: 2 STSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWR 61
S+SS E GRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLN CLEEW
Sbjct: 3 SSSSAQETGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNSCLEEWS 62
Query: 62 AKKLAVTVSVRRVGAR 77
AKKL++T SV V AR
Sbjct: 63 AKKLSITSSVCDVSAR 78
>Os11g0443700 Similar to Short chain alcohol dehydrogenase-like
Length = 260
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 59/67 (88%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
R+SLAGATALVTGGSKGIGRAIVEELASFGATVHTCARN+A L+RC EEW AK LAVTVS
Sbjct: 10 RFSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNQAELSRCQEEWTAKGLAVTVS 69
Query: 71 VRRVGAR 77
V V R
Sbjct: 70 VCDVAVR 76
>Os11g0438700 Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase)
Length = 264
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 62/76 (81%), Gaps = 2/76 (2%)
Query: 2 STSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWR 61
+TSS+ E RWSLAGATALVTGGSKGIGRAIVEELAS GATVHTCAR EA LNRC EE
Sbjct: 5 TTSSKNE--RWSLAGATALVTGGSKGIGRAIVEELASLGATVHTCARTEAPLNRCREELT 62
Query: 62 AKKLAVTVSVRRVGAR 77
AK LAVTVSV V R
Sbjct: 63 AKGLAVTVSVCDVSLR 78
>Os11g0438000 Similar to Short chain alcohol dehydrogenase-like
Length = 135
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 57/77 (74%)
Query: 1 MSTSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW 60
M++S RW LAGATALVTG SKGIGRAIVEEL FG+TVHTCAR+EA L+RC EE
Sbjct: 9 MASSGAGRDERWILAGATALVTGRSKGIGRAIVEELVGFGSTVHTCARSEAELSRCQEEL 68
Query: 61 RAKKLAVTVSVRRVGAR 77
AK LAV+ SV V R
Sbjct: 69 TAKGLAVSFSVCDVSVR 85
>Os03g0268900 Similar to Short chain alcohol dehydrogenase-like
Length = 270
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 10 GRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTV 69
GRWSL G ALVTGG++GIGRA+VEELA+ GA VHTC+RNEA L L+EW A+ VT+
Sbjct: 14 GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTI 73
Query: 70 SVRRVGAR 77
SV + AR
Sbjct: 74 SVCDLSAR 81
>Os11g0654400 Similar to Short chain alcohol dehydrogenase-like
Length = 268
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 48/67 (71%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RW+LAGATALVTGGSKGIG AIVEELA FGA VHTCARN A L W + L VT +
Sbjct: 12 RWTLAGATALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTAT 71
Query: 71 VRRVGAR 77
V V AR
Sbjct: 72 VCDVSAR 78
>Os11g0652900 Similar to Short chain alcohol dehydrogenase-like
Length = 264
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 48/67 (71%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RW+LAGATALVTGGSKGIG AIVEELA FGA VHTCARN A L W + L VT +
Sbjct: 12 RWTLAGATALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTAT 71
Query: 71 VRRVGAR 77
V V AR
Sbjct: 72 VCDVSAR 78
>Os01g0931000 Glucose/ribitol dehydrogenase family protein
Length = 277
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 1 MSTSSRPEVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW 60
M+ +SR RWSLAG TALVTGG+KGIGRAIVEELA FG VHTC+R++A L CL W
Sbjct: 1 MAAASRAR--RWSLAGKTALVTGGTKGIGRAIVEELAGFGVRVHTCSRHDADLQDCLRRW 58
>Os01g0930900 Similar to Short chain alcohol dehydrogenase-like
Length = 281
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 41/50 (82%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEW 60
RWSLAG TALVTGG+KGIGRAIVEELA FG VHTC+R++A L CL W
Sbjct: 13 RWSLAGKTALVTGGTKGIGRAIVEELAGFGVRVHTCSRHDADLQDCLRRW 62
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,546,661
Number of extensions: 77076
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 10
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)