FiT-DB / Search/ Help/ Sample detail

Os04g0293300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine dehydrogenase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.98 (0.0364) R2 : 0.759
β1 : 1.12 (0.146) R2dD : 0.0431 R2D : -0.0388
β2 : 2.82 (0.0865) R2dC : 0.569 R2C : 0.561
β3 : -2.11 (0.121) R2dE : 0.267 R2E : 0.151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.275 (0.0892) R2dN8 : 0.0102 R2N8 : -0.0445
σ : 0.647
deviance : 192.94
__
_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 23.5
memory length : 8653
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.79 0.646 8.93 1.65 2.83 -2.02 0.853 2.14 0.256 20.7 25.2 8736 21.8 --
193.05 0.647 8.98 1.33 2.72 -2.24 0.877 -- 0.303 20.5 23.6 8803 20.4 --
190.93 0.644 8.94 1.64 2.82 -2.04 -- 2.33 0.24 20.7 25.13 8747 22.6 --
192.94 0.647 8.98 1.12 2.82 -2.11 -- -- 0.275 20.7 23.5 8653 21.1 --
360.09 0.889 8.98 0.455 -- -2.58 -- 0.243 -0.0749 -- 23.2 158 23 --
319.48 0.838 9.18 -0.105 2.83 -- 0.845 -- -0.59 20.5 -- -- -- --
321.78 0.84 9.18 -0.132 2.83 -- -- -- -0.59 20.6 -- -- -- --
313.8 0.825 9.08 0.745 -- -2.87 -- -- -0.438 -- 18.7 214 23.4 --
212.41 0.679 9 -- 2.78 -1.57 -- -- 0.161 20.7 23.5 8641 1.52 --
770.5 1.3 9.11 -0.142 -- -- -- -- -0.616 -- -- -- -- --
322.23 0.84 9.18 -- 2.83 -- -- -- -0.575 20.6 -- -- -- --
303.45 0.811 9.09 -- -- -2.92 -- -- -0.53 -- 17.94 234 23.4 --
771.03 1.3 9.1 -- -- -- -- -- -0.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 194.70 wind 3 43200 > th dose dependent rect. 20 1
2 195.47 humidity 80 43200 < th dose independent rect. 22 1
3 195.91 wind 3 43200 > th dose dependent rect. 3 13
5 196.43 wind 3 43200 > th dose dependent rect. 24 16
6 196.48 wind 5 43200 > th dose dependent rect. 9 13
9 196.57 wind 3 43200 > th dose dependent rect. 20 21
12 196.69 humidity 80 43200 > th dose independent rect. 2 1
14 196.74 wind 5 43200 > th dose dependent rect. 10 20
18 196.86 temperature 25 4320 < th dose independent rect. 7 3
19 196.86 wind 5 43200 > th dose dependent rect. 10 18
21 196.91 wind 7 43200 > th dose independent rect. 2 16
32 197.10 wind 7 43200 > th dose independent rect. 23 19
41 197.22 temperature 20 14400 > th dose dependent rect. 19 1
45 197.27 wind 7 43200 > th dose independent rect. 20 22
46 197.28 wind 7 43200 > th dose independent rect. 2 20
49 197.30 wind 3 43200 > th dose dependent sin 2 NA
57 197.41 wind 5 43200 > th dose dependent rect. 3 19
63 197.45 wind 3 43200 > th dose dependent rect. 5 10
64 197.46 wind 9 43200 < th dose dependent rect. 20 2
69 197.52 wind 5 43200 > th dose dependent rect. 5 17
75 197.55 wind 5 43200 > th dose dependent sin 0 NA
78 197.57 wind 7 43200 < th dose independent rect. 2 16
79 197.57 wind 7 43200 < th dose independent rect. 3 19
87 197.66 wind 7 43200 > th dose independent rect. 10 21
90 197.69 wind 7 43200 > th dose independent rect. 6 16
98 197.73 wind 7 43200 < th dose independent rect. 23 19
106 197.79 wind 7 43200 > th dose independent sin 1 NA
112 197.82 wind 5 43200 < th dose independent rect. 19 2
120 197.84 wind 7 43200 < th dose independent rect. 20 22
129 197.90 wind 5 43200 > th dose dependent rect. 9 7
136 197.94 wind 7 43200 < th dose independent rect. 10 21
142 198.00 wind 7 43200 > th dose dependent sin 20 NA
156 198.10 wind 7 43200 < th dose independent sin 1 NA
179 198.18 temperature 25 4320 > th dose independent rect. 7 3
188 198.21 wind 7 43200 > th dose independent rect. 6 12
189 198.21 wind 9 43200 < th dose dependent rect. 3 12
200 198.24 wind 5 43200 > th dose independent rect. 19 2
209 198.28 wind 5 43200 > th dose dependent rect. 8 10
261 198.45 wind 7 43200 > th dose independent rect. 6 10
391 198.83 wind 7 43200 > th dose independent no NA NA
408 198.89 wind 7 43200 > th dose independent rect. 17 23
471 199.13 temperature 25 14400 > th dose independent rect. 13 17
475 199.16 wind 7 43200 < th dose independent no NA NA
505 199.26 wind 7 43200 < th dose independent rect. 17 23
533 199.37 wind 7 43200 > th dose independent rect. 15 23
567 199.59 wind 7 43200 < th dose independent rect. 15 23
572 199.61 temperature 25 14400 < th dose independent rect. 14 16
603 199.70 temperature 25 14400 < th dose independent rect. 14 13
625 199.81 temperature 25 14400 > th dose independent sin 16 NA
648 199.90 humidity 80 43200 < th dose independent rect. 22 7
665 199.97 humidity 80 43200 < th dose independent rect. 2 1
666 199.97 temperature 25 14400 < th dose independent rect. 16 5
669 199.97 wind 5 43200 > th dose dependent no NA NA
675 199.99 humidity 80 43200 > th dose independent rect. 23 5
676 199.99 humidity 80 43200 < th dose independent rect. 22 9
686 200.03 temperature 25 14400 > th dose independent rect. 16 5
697 200.06 temperature 25 14400 < th dose independent sin 16 NA
742 200.24 wind 3 43200 < th dose independent rect. 2 2
761 200.29 temperature 25 14400 > th dose independent rect. 19 1
788 200.36 wind 9 43200 < th dose dependent rect. 20 19
838 200.54 humidity 70 14400 < th dose dependent rect. 18 1
906 200.71 humidity 80 43200 < th dose independent rect. 2 5
939 200.77 wind 9 43200 < th dose dependent sin 4 NA