BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0293300 Os04g0293300|AK111082
(77 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06060.1 | chr5:1824066-1825833 REVERSE LENGTH=265 91 9e-20
AT2G29170.1 | chr2:12541864-12542280 REVERSE LENGTH=108 90 3e-19
AT2G29350.1 | chr2:12601036-12602222 FORWARD LENGTH=270 88 1e-18
AT2G29370.1 | chr2:12606059-12607363 FORWARD LENGTH=269 87 1e-18
AT1G07440.1 | chr1:2286436-2287665 REVERSE LENGTH=267 87 2e-18
AT2G29360.1 | chr2:12603849-12605121 FORWARD LENGTH=272 87 2e-18
AT1G07450.1 | chr1:2288038-2289256 REVERSE LENGTH=261 85 6e-18
AT2G29150.1 | chr2:12535715-12536964 REVERSE LENGTH=269 85 7e-18
AT2G29260.1 | chr2:12582523-12583954 FORWARD LENGTH=323 82 6e-17
AT2G29340.1 | chr2:12597131-12599009 FORWARD LENGTH=308 80 2e-16
AT2G29290.2 | chr2:12586498-12587684 FORWARD LENGTH=263 79 4e-16
AT2G29310.1 | chr2:12590068-12591260 FORWARD LENGTH=263 76 3e-15
AT2G29330.1 | chr2:12594604-12596196 FORWARD LENGTH=261 75 9e-15
AT2G29300.2 | chr2:12588214-12589643 FORWARD LENGTH=287 75 9e-15
AT2G29320.1 | chr2:12592180-12593377 FORWARD LENGTH=270 70 2e-13
AT2G30670.1 | chr2:13069313-13070904 REVERSE LENGTH=263 70 3e-13
>AT5G06060.1 | chr5:1824066-1825833 REVERSE LENGTH=265
Length = 264
Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSLAG TALVTGG++GIGRA+VEELA FGA VHTC+RN+ LN CL +W+A L V+ S
Sbjct: 6 RWSLAGKTALVTGGTRGIGRAVVEELAKFGAKVHTCSRNQEELNACLNDWKANGLVVSGS 65
Query: 71 V 71
V
Sbjct: 66 V 66
>AT2G29170.1 | chr2:12541864-12542280 REVERSE LENGTH=108
Length = 107
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 49/67 (73%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGGSKG+G A+VEELA GA VHTCARNE L C+ EW+AK VT S
Sbjct: 13 RWSLGGMTALVTGGSKGLGEAVVEELAMLGARVHTCARNETQLQECVREWQAKGFEVTTS 72
Query: 71 VRRVGAR 77
V V +R
Sbjct: 73 VCDVSSR 79
>AT2G29350.1 | chr2:12601036-12602222 FORWARD LENGTH=270
Length = 269
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 49/70 (70%)
Query: 8 EVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAV 67
E RWSL G TALVTGGSKGIG A+VEELA GA VHTCAR+E L L EW+AK V
Sbjct: 9 ENSRWSLGGMTALVTGGSKGIGEAVVEELAMLGAKVHTCARDETQLQERLREWQAKGFQV 68
Query: 68 TVSVRRVGAR 77
T SV V +R
Sbjct: 69 TTSVCDVSSR 78
>AT2G29370.1 | chr2:12606059-12607363 FORWARD LENGTH=269
Length = 268
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 50/67 (74%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
+WSL G TALVTGGSKG+G+A+VEELA GA VHTCAR+E L L EW+AK L VT S
Sbjct: 13 KWSLEGMTALVTGGSKGLGKAVVEELAMLGARVHTCARDETQLQESLREWQAKGLQVTTS 72
Query: 71 VRRVGAR 77
V V +R
Sbjct: 73 VCDVSSR 79
>AT1G07440.1 | chr1:2286436-2287665 REVERSE LENGTH=267
Length = 266
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 44/61 (72%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL T LVTGG+KGIG AIVEE A FGA +HTCARNE LN CL +W+ K VT S
Sbjct: 9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGS 68
Query: 71 V 71
V
Sbjct: 69 V 69
>AT2G29360.1 | chr2:12603849-12605121 FORWARD LENGTH=272
Length = 271
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 49/67 (73%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGGSKGIG A+VEELA+ GA +HTCAR+E L L +W+AK VT S
Sbjct: 13 RWSLVGMTALVTGGSKGIGEAVVEELATLGARIHTCARDETQLQESLRKWQAKGFQVTTS 72
Query: 71 VRRVGAR 77
V V +R
Sbjct: 73 VCDVSSR 79
>AT1G07450.1 | chr1:2288038-2289256 REVERSE LENGTH=261
Length = 260
Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 47/70 (67%)
Query: 8 EVGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAV 67
++ RWSL G TALVTGGSKGIG AIVEEL FGA VH C +E LN CL W AK V
Sbjct: 2 DINRWSLQGMTALVTGGSKGIGYAIVEELVGFGARVHICDIDETLLNECLSGWHAKGFEV 61
Query: 68 TVSVRRVGAR 77
+ S+ V +R
Sbjct: 62 SGSICDVSSR 71
>AT2G29150.1 | chr2:12535715-12536964 REVERSE LENGTH=269
Length = 268
Score = 85.1 bits (209), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 48/67 (71%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGGSKG+G A+VEELA GA VHTCAR+E L L EW+AK VT S
Sbjct: 13 RWSLEGMTALVTGGSKGLGEAVVEELAMLGARVHTCARDETQLQERLREWQAKGFEVTTS 72
Query: 71 VRRVGAR 77
V V +R
Sbjct: 73 VCDVSSR 79
>AT2G29260.1 | chr2:12582523-12583954 FORWARD LENGTH=323
Length = 322
Score = 81.6 bits (200), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 45/67 (67%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G +ALVTGG++GIGRAIVEELA GA VHTCARNE L CL +W V S
Sbjct: 65 RWSLNGMSALVTGGTRGIGRAIVEELAGLGAEVHTCARNEYELENCLSDWNRSGFRVAGS 124
Query: 71 VRRVGAR 77
V V R
Sbjct: 125 VCDVSDR 131
>AT2G29340.1 | chr2:12597131-12599009 FORWARD LENGTH=308
Length = 307
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGG+ GIG AIVEELA FGA +H C +EA LN+ L EW K V+ S
Sbjct: 4 RWSLKGMTALVTGGASGIGYAIVEELAGFGARIHVCDISEAKLNQSLSEWEKKGFQVSGS 63
Query: 71 VRRVGAR 77
V V +R
Sbjct: 64 VCDVASR 70
>AT2G29290.2 | chr2:12586498-12587684 FORWARD LENGTH=263
Length = 262
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 45/67 (67%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G ALVTGG+KGIG A+VEEL+ GA VHTCAR+E L L EW+ K VT S
Sbjct: 4 RWSLQGMNALVTGGTKGIGEAVVEELSILGARVHTCARDETQLQERLREWQEKGFQVTTS 63
Query: 71 VRRVGAR 77
+ V R
Sbjct: 64 ICDVSLR 70
>AT2G29310.1 | chr2:12590068-12591260 FORWARD LENGTH=263
Length = 262
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTG + GIG AIVEELASFGA +H C +E L++ L EW K V+ S
Sbjct: 4 RWSLQGMTALVTGAASGIGYAIVEELASFGAIIHICDISETLLSQSLSEWEKKGFQVSGS 63
Query: 71 VRRVGAR 77
+ V +R
Sbjct: 64 ICDVASR 70
>AT2G29330.1 | chr2:12594604-12596196 FORWARD LENGTH=261
Length = 260
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 42/61 (68%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGG+ GIG AIVEELA FGA +H C ++ LN+ L EW K V+ S
Sbjct: 4 RWSLQGLTALVTGGASGIGHAIVEELAGFGAKIHVCDISKTLLNQSLSEWEKKGFQVSGS 63
Query: 71 V 71
V
Sbjct: 64 V 64
>AT2G29300.2 | chr2:12588214-12589643 FORWARD LENGTH=287
Length = 286
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTG + GIG AIVEELA FGA +H C +E LN+ L EW K V+ S
Sbjct: 4 RWSLQGMTALVTGAASGIGYAIVEELAGFGARIHVCDISETLLNQSLREWEKKGFQVSGS 63
Query: 71 VRRVGAR 77
V V +R
Sbjct: 64 VCDVTSR 70
>AT2G29320.1 | chr2:12592180-12593377 FORWARD LENGTH=270
Length = 269
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 41/63 (65%)
Query: 12 WSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVSV 71
WSL G TALVTG + GIG AIVEELA FGA +H C ++ LN+ L EW K V+ SV
Sbjct: 11 WSLQGMTALVTGAASGIGYAIVEELAGFGAKIHICDISKTLLNQSLSEWENKGFQVSGSV 70
Query: 72 RRV 74
V
Sbjct: 71 CDV 73
>AT2G30670.1 | chr2:13069313-13070904 REVERSE LENGTH=263
Length = 262
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 11 RWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNRCLEEWRAKKLAVTVS 70
RWSL G TALVTGG+ GIG AIVEELA GA ++ C +E LN+ L EW K V+ S
Sbjct: 4 RWSLQGMTALVTGGASGIGHAIVEELAGLGARIYVCDISETLLNQSLSEWEKKGFQVSGS 63
Query: 71 V 71
+
Sbjct: 64 I 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,464,743
Number of extensions: 41013
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 16
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)