BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0225100 Os04g0225100|AK105234
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0225100 3\'-5\' exonuclease domain containing protein 402 e-113
Os01g0737600 3\'-5\' exonuclease domain containing protein 236 1e-62
Os01g0737700 3\'-5\' exonuclease domain containing protein 226 7e-60
Os01g0660800 3\'-5\' exonuclease domain containing protein 176 8e-45
Os01g0660500 136 1e-32
Os01g0300000 3\'-5\' exonuclease domain containing protein 117 4e-27
Os07g0112400 3\'-5\' exonuclease domain containing protein 102 3e-22
Os01g0299700 3\'-5\' exonuclease domain containing protein 98 4e-21
Os07g0112200 89 2e-18
Os04g0129200 3\'-5\' exonuclease domain containing protein 77 1e-14
>Os04g0225100 3\'-5\' exonuclease domain containing protein
Length = 211
Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/211 (94%), Positives = 200/211 (94%)
Query: 1 MATEIEAYYDDGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDV 60
MATEIEAYYDDGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDV
Sbjct: 1 MATEIEAYYDDGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDV 60
Query: 61 EWRXXXXXXXXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAAR 120
EWR LQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAAR
Sbjct: 61 EWRPAAPVPGPVAVLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAAR 120
Query: 121 LRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRN 180
LRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRN
Sbjct: 121 LRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRN 180
Query: 181 LSEDQFKYACADAFASREVGRRLYTCNCDGA 211
LSEDQFKYACADAFASREVGRRLYTCNCDGA
Sbjct: 181 LSEDQFKYACADAFASREVGRRLYTCNCDGA 211
>Os01g0737600 3\'-5\' exonuclease domain containing protein
Length = 208
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/206 (61%), Positives = 145/206 (70%), Gaps = 4/206 (1%)
Query: 1 MATEIEAYYDDGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDV 60
MAT I D G GTY ++FDED+ T+T SG V+ WL E RIHR + LVVGLDV
Sbjct: 1 MATSIVD--DFGDGTYTVAFDEDYIHTTVTYSGDDVDDWLDEILRIHRRRLNYLVVGLDV 58
Query: 61 EWRXXXXXXXX--XXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDA 118
EWR LQ+CV RRCL+FQILHADYVPD+L FLAD RFTFVGVG+ DD
Sbjct: 59 EWRPATYYHGPGPVAVLQICVGRRCLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDV 118
Query: 119 ARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDK 178
A+LR +GLEV VDLR LAA T+G+P LR AGL+ LVREVMGV KP+HVRVSAWD
Sbjct: 119 AKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPKPYHVRVSAWDS 178
Query: 179 RNLSEDQFKYACADAFASREVGRRLY 204
NL+ +Q YACADAFAS EVGR LY
Sbjct: 179 WNLTPEQVMYACADAFASFEVGRSLY 204
>Os01g0737700 3\'-5\' exonuclease domain containing protein
Length = 233
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/197 (60%), Positives = 134/197 (68%), Gaps = 2/197 (1%)
Query: 10 DDGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRXXXX-- 67
D G GTY ++FDED T+T SG +VE WL E RIH L+VGLDVEW
Sbjct: 33 DFGDGTYTVAFDEDKIYTTVTDSGEEVEEWLDEIVRIHHRRLDHLIVGLDVEWNPASGFC 92
Query: 68 XXXXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGL 127
LQ+CV RRCLVFQI+HADYVPD L FL D RFTFVGVG+ DD +LR Y L
Sbjct: 93 ALGPVAVLQICVGRRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDL 152
Query: 128 EVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFK 187
EV AVDLR LAA T+G+P LR GL+ LV EVM V M+KPHHVRVSAWD R L+ DQ
Sbjct: 153 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 212
Query: 188 YACADAFASREVGRRLY 204
YACADAFAS EVGR LY
Sbjct: 213 YACADAFASFEVGRSLY 229
>Os01g0660800 3\'-5\' exonuclease domain containing protein
Length = 199
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Query: 18 LSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRXX-XXXXXXXXXLQ 76
++F + T+T SG VE WL E + + G L+VGLDVEWR LQ
Sbjct: 13 VAFGDAVITTTVTSSGAAVEGWLRE---VRAAYGPGLIVGLDVEWRPSYGPAQNPVALLQ 69
Query: 77 LCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLR 136
LCVDRRCL+FQ+L+ADYVP +L RFLA FVGVGV DA RL +GL V DLR
Sbjct: 70 LCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLR 129
Query: 137 ALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 196
LAA LGRP+L +AGL+A+VR VMG + KP V +S WD LS +Q +YAC DA+ S
Sbjct: 130 PLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAYVS 189
Query: 197 REVGRRL 203
EVGRRL
Sbjct: 190 FEVGRRL 196
>Os01g0660500
Length = 382
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 21 DEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRX----XXXXXXXXXXLQ 76
D T+T S ++ E R G L+VG+D EWR LQ
Sbjct: 186 DTIPIHTTITSSHSLAAQFINEIARERPQGG--LIVGIDTEWRTDHLPNGKTCYKVAVLQ 243
Query: 77 LCVDRRCLVFQILHA-DYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDL 135
LCV RRCL+FQI A + VP L+ FLADP FVGV V +D RL L V AVDL
Sbjct: 244 LCVGRRCLLFQIYQAGNMVPHELAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDL 303
Query: 136 RALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFA 195
R AA LG+P+L RAGL+ L VMG M+K ++ S W + L+ +Q YAC DA+
Sbjct: 304 RYAAAAVLGQPELARAGLKRLALTVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYV 363
Query: 196 SREVGRRLYT 205
S E+GRRL +
Sbjct: 364 SYEIGRRLLS 373
>Os01g0300000 3\'-5\' exonuclease domain containing protein
Length = 201
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 97/192 (50%), Gaps = 5/192 (2%)
Query: 16 YLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRXXXXX--XXXXX 73
+ + F D T+T + W R G L+VGLD EW+
Sbjct: 8 HTVRFGSATIDTTVTSDVAAADEW-ARGVRAAARGGRGLIVGLDCEWKPNHVSWKTSKVA 66
Query: 74 XLQLCVDRR-CLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRA 132
LQLC R CLV Q+ +A+ VP A++ L DP VG+GV +DAA+L YG+
Sbjct: 67 VLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAP 126
Query: 133 VDLRALAADTLGRPDL-RRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACA 191
VDL LG RR GL+ REV+G+ M+KP V +S W+KR L Q +YAC
Sbjct: 127 VDLEDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACI 186
Query: 192 DAFASREVGRRL 203
DA+ S ++G R+
Sbjct: 187 DAYVSYKLGERV 198
>Os07g0112400 3\'-5\' exonuclease domain containing protein
Length = 768
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 54 LVVGLDVEWRXX------XXXXXXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRF 107
L+VGL V+W LQLCV RCLVF + HAD +P AL RFLADPR
Sbjct: 62 LLVGLGVQWTPLRRPLHRGSPPPPPATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRI 121
Query: 108 TFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQ-MD 166
TFVG G +D L Y L V A +LRA+AA + A + A+ +G +
Sbjct: 122 TFVGSGASNDRRMLSAYYDLHVASARELRAVAA-------MGNASMEAMADRFLGYPGIA 174
Query: 167 KPHHVRVSAWDKRNLSEDQFKYACADAF 194
KP +V +SAW LS +Q +YAC DA+
Sbjct: 175 KPTNVSMSAWHAPYLSIEQVEYACVDAY 202
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 91/197 (46%), Gaps = 19/197 (9%)
Query: 15 TYLLSFDEDFFDATLTKSGGKVESWLGETYRIH----RSCGHPLVVGLDVEWRXXXXXXX 70
TY++ AT+T W+ T H RS G L V + V+W
Sbjct: 564 TYVVRVGASRVVATVTARPAVARRWVFSTRWRHGRRLRS-GAGLTVAMGVQWTPPSRALA 622
Query: 71 XXX-----XLQLCVDRRCLVFQILHADYVPDALSRFLADPRF-TFVGVGVRDDAARLRVG 124
LQLCV RCLVFQ+ + P AL RFLAD FVG G+R D +L
Sbjct: 623 GGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAH 682
Query: 125 YGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQ-MDKPHHVRVSAWDKRNLSE 183
+GL V +LRA+ +G + R + E++G+ + KP V S WD LS+
Sbjct: 683 HGLHVACTRELRAVTG--MGSSSMAR-----MAEELLGLAGIKKPAAVGRSRWDAPKLSK 735
Query: 184 DQFKYACADAFASREVG 200
Q KYAC DAF S +G
Sbjct: 736 KQVKYACVDAFLSHRLG 752
>Os01g0299700 3\'-5\' exonuclease domain containing protein
Length = 237
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 96/195 (49%), Gaps = 17/195 (8%)
Query: 11 DGSGTYLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHP------LVVGLDVEWRX 64
D G +SF D T+T + W+ R+ S L+VGLD EW+
Sbjct: 22 DVDGGCTVSFGSAAIDTTVTSDAAAADEWV---RRVRASAATTPRGGGGLLVGLDCEWKP 78
Query: 65 X----XXXXXXXXXLQLCVDRRCLVFQILH---ADYVPDALSRFLADPRFTFVGVGVRDD 117
LQLC CL+ Q+LH A VP + LADP VG+G+ ++
Sbjct: 79 CDHLWPAVAPTVAILQLCAGDSCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGEN 138
Query: 118 AARLRVGYGLEVPRAVDLRALAADTLGR-PDLRRAGLRALVREVMGVQMDKPHHVRVSAW 176
AA+L GYG+ VDL + LGR P RR GL+ VREV+G+ M+KP V S W
Sbjct: 139 AAKLADGYGVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDW 198
Query: 177 DKRNLSEDQFKYACA 191
++R+L Q +YAC+
Sbjct: 199 ERRHLDAAQVRYACS 213
>Os07g0112200
Length = 159
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 75 LQLCVDRRCLVFQILHADYVPDA-LSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAV 133
LQLC RCLVFQ+ HAD A L RFLAD R FVG GVR D +L +GLEV R V
Sbjct: 19 LQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEVARTV 78
Query: 134 DLRALAADTLGRPDLRRAGLRALVREVMGVQ--MDKPHHVRVSAWDKRNLSEDQFKYACA 191
+LR+LA +G ++R + E +G KP V S WD R LS++Q +YAC
Sbjct: 79 ELRSLAG--MGNTSMQR-----MAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYACV 131
Query: 192 DAFAS 196
DA+ S
Sbjct: 132 DAYLS 136
>Os04g0129200 3\'-5\' exonuclease domain containing protein
Length = 298
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 56 VGLDVEWRXXXX---XXXXXXXLQLCVDR-RCLVFQILHADYVPDALSRFLADPRFTFVG 111
+G D+EWR +QLC++R RC V I+H+ VP L L D VG
Sbjct: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
Query: 112 VGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHV 171
+ + +DA ++ Y + V +DL LA LG P +R L +L V ++ KP ++
Sbjct: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPP-KRWSLASLTEMVTCRELPKPSNI 248
Query: 172 RVSAWDKRNLSEDQFKYACADAFAS 196
R+ W+ LS+ Q +YA DA+ S
Sbjct: 249 RMGNWEAYVLSKQQLQYAATDAYIS 273
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,258,299
Number of extensions: 280784
Number of successful extensions: 875
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 12
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)