Os01g0300000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0300000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : 3'-5' exonuclease domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.97 | 0.684 | 2.29 | 1.98 | 0.0691 | -36.2 | -0.681 | 127 | -0.148 | 2.38 | 0.1 | 722 | 19 | 1 |
| 225.92 | 0.705 | 2.85 | 0.218 | 0.177 | 4.89 | 0.327 | -- | -0.154 | 5.6 | 0.1 | 722 | 19 | 1 |
| 216.15 | 0.685 | 2.36 | 1.74 | 0.0604 | -36 | -- | 127 | -0.124 | 2.47 | 0.1805 | 611 | 19 | 0.959 |
| 226.04 | 0.705 | 2.86 | 0.219 | 0.183 | 4.82 | -- | -- | -0.156 | 4.61 | 0.2674 | 238 | 19.9 | 1.47 |
| 216.31 | 0.685 | 2.36 | 1.74 | -- | -36.3 | -- | 128 | -0.144 | -- | 0.2311 | 611 | 19.1 | 0.967 |
| 248.88 | 0.74 | 2.86 | 0.286 | 0.154 | -- | -0.138 | -- | -0.162 | 3.56 | -- | -- | -- | -- |
| 248.94 | 0.739 | 2.86 | 0.288 | 0.154 | -- | -- | -- | -0.161 | 3.77 | -- | -- | -- | -- |
| 225.38 | 0.699 | 2.87 | 0.0579 | -- | 2.97 | -- | -- | -0.224 | -- | 0.1726 | 447 | 22.2 | 1.62 |
| 227.3 | 0.706 | 2.86 | -- | 0.188 | 4.9 | -- | -- | -0.18 | 4.59 | 0.2674 | 238 | 19.9 | 1.47 |
| 250.25 | 0.739 | 2.86 | 0.295 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 251.13 | 0.741 | 2.86 | -- | 0.16 | -- | -- | -- | -0.193 | 3.75 | -- | -- | -- | -- |
| 225.24 | 0.699 | 2.86 | -- | -- | 2.91 | -- | -- | -0.159 | -- | 0.2003 | 451 | 22.1 | 1.71 |
| 252.54 | 0.742 | 2.87 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.97 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 19 | 1 |
| 3 | 220.85 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 4 | 220.87 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 5 | 221.86 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 6 | 221.92 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 7 | 222.27 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 9 | 222.45 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 10 | 222.50 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 12 | 222.58 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 14 | 222.91 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 16 | 223.19 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 23 | 224.08 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 42 | 225.88 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 52 | 225.88 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 78 | 226.55 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 116 | 227.59 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 7 |
| 120 | 227.59 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 7 |
| 135 | 228.22 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 158 | 228.77 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 3 |
| 160 | 228.77 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 3 |
| 168 | 228.98 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 169 | 228.99 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 173 | 229.01 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 180 | 229.05 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 225 | 229.12 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 226 | 229.12 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 230 | 229.19 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 233 | 229.20 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 267 | 229.43 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 271 | 229.45 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 1 |
| 272 | 229.45 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 293 | 229.85 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 10 |
| 306 | 229.95 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 335 | 230.10 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 9 |
| 443 | 230.95 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 449 | 231.05 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 20 | 7 |
| 452 | 231.05 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 453 | 231.08 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 458 | 231.26 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 519 | 231.83 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 520 | 231.83 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 581 | 232.23 | radiation | 10.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 594 | 232.31 | wind | 5.0 | 10 | > th | dose independent | rect. | 19 | 6 |
| 638 | 232.62 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 714 | 232.91 | wind | 5.0 | 10 | > th | dose independent | rect. | 19 | 11 |
| 733 | 233.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 734 | 233.08 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 738 | 233.10 | wind | 5.0 | 10 | < th | dose independent | sin | 10 | NA |
| 739 | 233.10 | radiation | 10.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 839 | 233.44 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 845 | 233.49 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 849 | 233.53 | temperature | 20.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 850 | 233.53 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 1 |
| 854 | 233.54 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 868 | 233.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 889 | 233.63 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 900 | 233.66 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 901 | 233.66 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 933 | 233.74 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 953 | 233.84 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 980 | 233.95 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 3 |
| 982 | 233.95 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 3 |