BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0300000 Os01g0300000|AK063585
(201 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289 81 3e-16
AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240 67 9e-12
AT3G12410.1 | chr3:3946267-3946959 REVERSE LENGTH=231 66 1e-11
AT5G48350.1 | chr5:19593566-19594165 FORWARD LENGTH=200 61 3e-10
AT3G12440.1 | chr3:3951199-3952260 REVERSE LENGTH=354 61 5e-10
AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590 61 5e-10
AT3G12460.1 | chr3:3954695-3955423 REVERSE LENGTH=243 60 6e-10
AT3G12470.1 | chr3:3956123-3956785 REVERSE LENGTH=221 59 1e-09
AT3G12430.1 | chr3:3949580-3950377 REVERSE LENGTH=239 52 3e-07
>AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289
Length = 288
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 46 IVGLDCEWKPNHVSW-KTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLV 104
VGLD EW+P+ KVA +Q+C +C V+ +F++ +P ++ L+ D ++ V
Sbjct: 129 FVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKV 187
Query: 105 GIGVGEDAAKLEADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPR 164
GIG+ D+ KL DYGV D+ED + ++ + KP
Sbjct: 188 GIGIDGDSVKLFHDYGVSIK---DVEDLSDLANQKIGGDKKWGLASLTETLVCKELLKPN 244
Query: 165 RVTMSNWEKRELDPAQVEYACIDAYVSYKL 194
R+ + NWE L Q++YA DAY S+ L
Sbjct: 245 RIRLGNWEFYPLSKQQLQYAATDAYASWHL 274
>AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240
Length = 239
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 12 FGSATIDTTVTSDVAAADEWXXXXXXXXXXXXX--LIVGLDCEWKPNHVSWKTSKVAVLQ 69
FG I TVT + W L+VGLD +W P +LQ
Sbjct: 22 FGERLI-VTVTHTTSTIRRWIHSIRFFSRLRSSHPLVVGLDVQWTPGG---SDPPPDILQ 77
Query: 70 LCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAPVDL 129
LC G R CL++QL + R+P + L D ++ VG+ +D KLE +++
Sbjct: 78 LCVGNR-CLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLER-----FRHQLEI 131
Query: 130 EDACNXXXXXXXXXXXXXXKGYAREVLGM-AMEKPRRVTMSNWEKRELDPAQVEYACIDA 188
+ + E LG + K + + MSNW R L Q+ A D
Sbjct: 132 WRLLDIRHYLPTRLLNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASDDV 191
Query: 189 YVSYKLG 195
YV KLG
Sbjct: 192 YVCCKLG 198
>AT3G12410.1 | chr3:3946267-3946959 REVERSE LENGTH=231
Length = 230
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 4 TTTRHTVRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXXX-LIVGLDCEWKP------- 55
T ++V F TVT D + W L+VG+ +W P
Sbjct: 14 THLEYSVDFFGDEFIVTVTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQWTPFSYYSDP 73
Query: 56 ---NHVS-------WKTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVG 105
N+ + + + +LQLC G R CL++QL Y ++VP + L DP VG
Sbjct: 74 RPNNYYADPPPIRYYSDNPADILQLCVGNR-CLIIQLGYCDQVPNNLRSFLADPETTFVG 132
Query: 106 IGVGEDAAKLEADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKP-- 163
+ G+DA KL C +++ + + + E++ M
Sbjct: 133 VWNGQDAGKLAR-----CCHQLEIGELLDIRRYVTDSWGRSMRRSSFEEIVEECMGYQGV 187
Query: 164 ---RRVTMSNWEKRELDPAQVEYACIDAYVSYKLG 195
++MS+W +LD Q+ A +DAYV ++LG
Sbjct: 188 MLDPEISMSDWTAYDLDLDQILQASLDAYVCHQLG 222
>AT5G48350.1 | chr5:19593566-19594165 FORWARD LENGTH=200
Length = 199
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 22/200 (11%)
Query: 10 VRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXXXLIVGLDCEWKPNHVSWKTSKVAVLQ 69
V+ G +I TTVT + I+GLD E K +K +LQ
Sbjct: 6 VKIGIDSIKTTVTEKERDINRLVKTFLSNKNNRKK-IIGLDTERV--QKGRKLNKTVLLQ 62
Query: 70 LCAGERFCLVLQL---------FYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYG 120
LC G+ CL++QL + +P + + L P VGIG+ + +LE+++G
Sbjct: 63 LCDGDN-CLIVQLPDEDEDEGEGEDDNLPLPLFNFLNLPEFTFVGIGINKTMMRLESEFG 121
Query: 121 VWCAAPVDLEDAC-NXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPA 179
+ C V++ A N R ++ E+P + +WEK L+
Sbjct: 122 LTCKNVVEIGPATWNLTNMTTDVKF--------RISAIVSTERPSNAVLEDWEKFVLNKN 173
Query: 180 QVEYACIDAYVSYKLGERVL 199
Q++ A +AY ++ +G +L
Sbjct: 174 QIKLAASNAYFAFGIGNILL 193
>AT3G12440.1 | chr3:3951199-3952260 REVERSE LENGTH=354
Length = 353
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 68 LQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLE-ADYGVWCAAP 126
LQLC G R C+++QLFY NRVP + LGD + VG +DA KL+ + + + A
Sbjct: 219 LQLCVGNR-CIIIQLFYCNRVPHVLRRFLGDRNHTFVGFWNSQDAGKLKRSRHRLEIAEL 277
Query: 127 VDLEDACNXXXXXXXXXXXXXXKGYAREVL--------GMAMEKPRRVTMSNWEKRELDP 178
+DL + KG + EV+ G+ +EK + MS+W +L
Sbjct: 278 LDLRNHV-------VDSRGRGLKGRSFEVVVGECLGYRGVRLEK--AIGMSDWSVYDLSY 328
Query: 179 AQVEYACIDAYVSYKLGER 197
Q+ A ID YV KLG R
Sbjct: 329 DQILQASIDVYVCSKLGFR 347
>AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590
Length = 589
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 46 IVGLDCEWKPNHVSW-KTSKVAVLQLCAGER-FCLVLQLFYANR---VPPAVADLLGDPS 100
+VG+DCEWKPN++ K +KV+++Q+ + + F L L Y + + ++ +L S
Sbjct: 380 VVGIDCEWKPNYIKGSKQNKVSIMQIGSDTKIFILDLIKLYNDASEILDNCLSHILQSKS 439
Query: 101 VRLVGIGVGEDAAKLEADYG-VWCAAPVD-LEDACNXXXXXXXXXXXXXXKGYAREVLGM 158
+G D +L YG + C D L D N G +++LG+
Sbjct: 440 TLKLGYNFQCDIKQLALSYGDLKCFERYDMLLDIQNVFNEPFGGLA-----GLTKKILGV 494
Query: 159 AMEKPRRVTMSNWEKRELDPAQVEYACIDAYV 190
++ K RR S+WE+R L Q+EYA +DA V
Sbjct: 495 SLNKTRR--NSDWEQRPLSQNQLEYAALDAAV 524
>AT3G12460.1 | chr3:3954695-3955423 REVERSE LENGTH=243
Length = 242
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 83/214 (38%), Gaps = 29/214 (13%)
Query: 4 TTTRHTVRFGSATIDTTVTSDVAAADEWXX-XXXXXXXXXXXLIVGLDCEWKPN------ 56
T R++V F + TVT D + +W L+VG+ +W P+
Sbjct: 13 TQQRYSVDFFGEELFVTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYHPAS 72
Query: 57 -HVSWKTSKVA-------------------VLQLCAGERFCLVLQLFYANRVPPAVADLL 96
VS+++ LQLC G R C+++QL Y RVP + + L
Sbjct: 73 PPVSYRSDSSPDSYRSDSPPVFYSSDPPADTLQLCVGNR-CIIIQLRYCERVPQVLRNFL 131
Query: 97 GDPSVRLVGIGVGEDAAKLE-ADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREV 155
D VGI +DA KLE + + + A +DL + + K +
Sbjct: 132 ADRDNTFVGIWNSQDAGKLERSRHQLEIAELMDLREFVSDSSGRRSMYNYSLEKIVEENL 191
Query: 156 LGMAMEKPRRVTMSNWEKRELDPAQVEYACIDAY 189
+ R V+MS+W L Q+ A ID Y
Sbjct: 192 GYPGVRLDREVSMSDWRVYNLSYDQILQASIDVY 225
>AT3G12470.1 | chr3:3956123-3956785 REVERSE LENGTH=221
Length = 220
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 14/199 (7%)
Query: 4 TTTRHTVRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXXX--LIVGLDCEWKPNHVSWK 61
T +H V F + TVT + W L+VG+ +W+P+
Sbjct: 13 THQKHFVDFFGDDLIVTVTPTASVIRRWIRSVRSYNRNHSVHPLVVGIGVQWRPDSSD-P 71
Query: 62 TSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGV 121
LQLC G R CL++QL Y +P + L DP VG+ G+D KLE
Sbjct: 72 DPPPKTLQLCVGSR-CLIIQLGYNYGLPKVLRTFLADPKTTFVGVWNGQDQKKLEK---- 126
Query: 122 WCAAPVDLEDACNXXXXXXXXXXXX----XXKGYAREVLG-MAMEKPRRVTMSNWEKREL 176
C V++ + + +E LG + + + MS+W L
Sbjct: 127 -CRHRVEIGKLLDIRMFVRDSRGARMCFCSFEQIVKERLGRVGVRLDPAICMSDWGVYNL 185
Query: 177 DPAQVEYACIDAYVSYKLG 195
+ QV A I++YV +KL
Sbjct: 186 NHYQVLQASIESYVCFKLA 204
>AT3G12430.1 | chr3:3949580-3950377 REVERSE LENGTH=239
Length = 238
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 68 LQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLE-ADYGVWCAAP 126
LQLC G R C+++QL + RVP + + L D VGI +DA KL+ + + + A
Sbjct: 104 LQLCVGNR-CIIIQLSHCERVPQVLRNFLADRDYTFVGIWNSQDAGKLKRSKHELEIAVL 162
Query: 127 VDLEDACNXXXXXXXXXXXXXXKGYAREVLGMA-MEKPRRVTMSNWEKRELDPAQVEYAC 185
+DL + + E LG + + R+V+ S+W +L Q+ A
Sbjct: 163 LDLRKFVS--DSSGRTMKRCSFEKIVEENLGHSGVRLDRKVSRSDWRVYDLRYVQILQAS 220
Query: 186 IDAYVSYKLG 195
ID Y KL
Sbjct: 221 IDVYACCKLA 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,677,381
Number of extensions: 118623
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 9
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)