BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0300000 Os01g0300000|AK063585
(201 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0300000 3\'-5\' exonuclease domain containing protein 349 1e-96
Os01g0299700 3\'-5\' exonuclease domain containing protein 183 8e-47
Os01g0660800 3\'-5\' exonuclease domain containing protein 120 5e-28
Os01g0660500 116 1e-26
Os04g0225100 3\'-5\' exonuclease domain containing protein 112 1e-25
Os01g0737600 3\'-5\' exonuclease domain containing protein 112 2e-25
Os01g0737700 3\'-5\' exonuclease domain containing protein 110 9e-25
Os07g0112400 3\'-5\' exonuclease domain containing protein 84 5e-17
Os07g0112200 75 3e-14
Os04g0129200 3\'-5\' exonuclease domain containing protein 74 1e-13
>Os01g0300000 3\'-5\' exonuclease domain containing protein
Length = 201
Score = 349 bits (895), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/201 (86%), Positives = 174/201 (86%)
Query: 1 MVMTTTRHTVRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXXXLIVGLDCEWKPNHVSW 60
MVMTTTRHTVRFGSATIDTTVTSDVAAADEW LIVGLDCEWKPNHVSW
Sbjct: 1 MVMTTTRHTVRFGSATIDTTVTSDVAAADEWARGVRAAARGGRGLIVGLDCEWKPNHVSW 60
Query: 61 KTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYG 120
KTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYG
Sbjct: 61 KTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYG 120
Query: 121 VWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQ 180
VWCAAPVDLEDACN KGYAREVLGMAMEKPRRVTMSNWEKRELDPAQ
Sbjct: 121 VWCAAPVDLEDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQ 180
Query: 181 VEYACIDAYVSYKLGERVLAN 201
VEYACIDAYVSYKLGERVLAN
Sbjct: 181 VEYACIDAYVSYKLGERVLAN 201
>Os01g0299700 3\'-5\' exonuclease domain containing protein
Length = 237
Score = 183 bits (464), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 119/186 (63%), Gaps = 10/186 (5%)
Query: 9 TVRFGSATIDTTVTSDVAAADEWXXXXXXXXXXX----XXLIVGLDCEWKPNHVSWKT-- 62
TV FGSA IDTTVTSD AAADEW L+VGLDCEWKP W
Sbjct: 28 TVSFGSAAIDTTVTSDAAAADEWVRRVRASAATTPRGGGGLLVGLDCEWKPCDHLWPAVA 87
Query: 63 SKVAVLQLCAGERFCLVLQLFY---ANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADY 119
VA+LQLCAG+ CL+LQL + A RVPP V DLL DPSVRLVGIG+GE+AAKL Y
Sbjct: 88 PTVAILQLCAGD-SCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGY 146
Query: 120 GVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPA 179
GV CAAPVDLED C+ KGY REVLG+ MEKP VT S+WE+R LD A
Sbjct: 147 GVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAA 206
Query: 180 QVEYAC 185
QV YAC
Sbjct: 207 QVRYAC 212
>Os01g0660800 3\'-5\' exonuclease domain containing protein
Length = 199
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 5/190 (2%)
Query: 10 VRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXXXLIVGLDCEWKPNHVSWKTSKVAVLQ 69
V FG A I TTVTS AA + W LIVGLD EW+P++ + + VA+LQ
Sbjct: 13 VAFGDAVITTTVTSSGAAVEGWLREVRAAYGPG--LIVGLDVEWRPSYGPAQ-NPVALLQ 69
Query: 70 LCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAPVDL 129
LC +R CL+ QL YA+ VP ++ L + VG+GV +DA +L D+G+ A DL
Sbjct: 70 LCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADL 128
Query: 130 EDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACIDAY 189
+ R V+G + KP+RVTMS W+ L Q+ YACIDAY
Sbjct: 129 R-PLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAY 187
Query: 190 VSYKLGERVL 199
VS+++G R+L
Sbjct: 188 VSFEVGRRLL 197
>Os01g0660500
Length = 382
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 17 IDTTVTSDVAAADEWXXXXXXXXXXXXXLIVGLDCEWKPNHV-SWKTS-KVAVLQLCAGE 74
I TT+TS + A ++ LIVG+D EW+ +H+ + KT KVAVLQLC G
Sbjct: 190 IHTTITSSHSLAAQFINEIARERPQGG-LIVGIDTEWRTDHLPNGKTCYKVAVLQLCVGR 248
Query: 75 RFCLVLQLFYA-NRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAPVDLEDAC 133
R CL+ Q++ A N VP +A+ L DPSVR VG+ V D +L D + A VDL A
Sbjct: 249 R-CLLFQIYQAGNMVPHELAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDLRYAA 307
Query: 134 NXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACIDAYVSYK 193
K A V+G MEK + +T S W + L QV YACIDAYVSY+
Sbjct: 308 -AAVLGQPELARAGLKRLALTVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYVSYE 366
Query: 194 LGERVLA 200
+G R+L+
Sbjct: 367 IGRRLLS 373
>Os04g0225100 3\'-5\' exonuclease domain containing protein
Length = 211
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 5/192 (2%)
Query: 8 HTVRFGSATIDTTVTSDVAAADEWXXXXXXXXXX-XXXLIVGLDCEWKPNHVSWKTSKVA 66
+ + F D T+T + W L+VGLD EW+P + VA
Sbjct: 16 YLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRP--AAPVPGPVA 73
Query: 67 VLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAP 126
VLQLC +R CLV Q+ +A+ VP A++ L DP VG+GV +DAA+L YG+
Sbjct: 74 VLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRA 132
Query: 127 VDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACI 186
VDL A + REV+G+ M+KP V +S W+KR L Q +YAC
Sbjct: 133 VDLR-ALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACA 191
Query: 187 DAYVSYKLGERV 198
DA+ S ++G R+
Sbjct: 192 DAFASREVGRRL 203
>Os01g0737600 3\'-5\' exonuclease domain containing protein
Length = 208
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Query: 8 HTVRFGSATIDTTVTSDVAAADEWX-XXXXXXXXXXXXLIVGLDCEWKPNHVSWKTSKVA 66
+TV F I TTVT D+W L+VGLD EW+P VA
Sbjct: 14 YTVAFDEDYIHTTVTYSGDDVDDWLDEILRIHRRRLNYLVVGLDVEWRPATYYHGPGPVA 73
Query: 67 VLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAP 126
VLQ+C G R CL+ Q+ +A+ VP ++ D L D VG+G+ +D AKL + +G+
Sbjct: 74 VLQICVGRR-CLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENV 132
Query: 127 VDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACI 186
VDL +G REV+G+ KP V +S W+ L P QV YAC
Sbjct: 133 VDLR-YLAAQTIGKPALRSAGLQGLVREVMGVWAPKPYHVRVSAWDSWNLTPEQVMYACA 191
Query: 187 DAYVSYKLGE 196
DA+ S+++G
Sbjct: 192 DAFASFEVGR 201
>Os01g0737700 3\'-5\' exonuclease domain containing protein
Length = 233
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 90/189 (47%), Gaps = 3/189 (1%)
Query: 8 HTVRFGSATIDTTVTSDVAAADEWXXXXXXXXXXXX-XLIVGLDCEWKPNHVSWKTSKVA 66
+TV F I TTVT +EW LIVGLD EW P VA
Sbjct: 39 YTVAFDEDKIYTTVTDSGEEVEEWLDEIVRIHHRRLDHLIVGLDVEWNPASGFCALGPVA 98
Query: 67 VLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAP 126
VLQ+C G R CLV Q+ +A+ VP + D LGD VG+G+ +D KL Y +
Sbjct: 99 VLQICVGRR-CLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENA 157
Query: 127 VDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACI 186
VDL +G EV+ + MEKP V +S W+ R+L QV YAC
Sbjct: 158 VDLR-YLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACA 216
Query: 187 DAYVSYKLG 195
DA+ S+++G
Sbjct: 217 DAFASFEVG 225
>Os07g0112400 3\'-5\' exonuclease domain containing protein
Length = 768
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 45 LIVGLDCEW----KPNHVSWKTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPS 100
L+VGL +W +P H A LQLC G R CLV L +A+ +P A+ L DP
Sbjct: 62 LLVGLGVQWTPLRRPLHRGSPPPPPATLQLCVGHR-CLVFHLAHADAIPAALRRFLADPR 120
Query: 101 VRLVGIGVGEDAAKLEADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGM-A 159
+ VG G D L A Y DL A + A LG
Sbjct: 121 ITFVGSGASNDRRMLSAYY--------DLHVASARELRAVAAMGNASMEAMADRFLGYPG 172
Query: 160 MEKPRRVTMSNWEKRELDPAQVEYACIDAYVSYKL 194
+ KP V+MS W L QVEYAC+DAY++++L
Sbjct: 173 IAKPTNVSMSAWHAPYLSIEQVEYACVDAYLAFRL 207
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 8 HTVRFGSATIDTTVTSDVAAADEWXXXXX----XXXXXXXXLIVGLDCEWKPNH---VSW 60
+ VR G++ + TVT+ A A W L V + +W P
Sbjct: 565 YVVRVGASRVVATVTARPAVARRWVFSTRWRHGRRLRSGAGLTVAMGVQWTPPSRALAGG 624
Query: 61 KTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVR-LVGIGVGEDAAKLEADY 119
+ LQLC G R CLV Q+ N P A+ L D V VG G+ D KL A +
Sbjct: 625 AEPRPGTLQLCVGSR-CLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHH 683
Query: 120 GVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMA-MEKPRRVTMSNWEKRELDP 178
G L AC A E+LG+A ++KP V S W+ +L
Sbjct: 684 G--------LHVACTRELRAVTGMGSSSMARMAEELLGLAGIKKPAAVGRSRWDAPKLSK 735
Query: 179 AQVEYACIDAYVSYKLGERVLA 200
QV+YAC+DA++S++LG V A
Sbjct: 736 KQVKYACVDAFLSHRLGVHVGA 757
>Os07g0112200
Length = 159
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 49 LDCEWKPNHVSWKTSKVAVLQLCAGERFCLVLQLFYANRVPPA-VADLLGDPSVRLVGIG 107
+ +W P T + LQLCAG R CLV QL +A+ PA + L D V VG G
Sbjct: 1 MGVQWTPP-FRRATIRPGTLQLCAGHR-CLVFQLAHADAAVPAALRRFLADERVVFVGYG 58
Query: 108 VGEDAAKLEADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLG--MAMEKPRR 165
V D KLE +G+ A V+L + A E LG KPR+
Sbjct: 59 VRSDCRKLEEQHGLEVARTVELRSLAGMGNTSM--------QRMAEEHLGWDGVTTKPRK 110
Query: 166 VTMSNWEKRELDPAQVEYACIDAYVSYKLGERVLA 200
V S W+ R L QV+YAC+DAY+S++L V+A
Sbjct: 111 VGTSRWDARRLSKEQVQYACVDAYLSFRLAVHVVA 145
>Os04g0129200 3\'-5\' exonuclease domain containing protein
Length = 298
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 4/151 (2%)
Query: 47 VGLDCEWKP-NHVSWKTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVG 105
+G D EW+P KVAV+QLC C V+ + ++ VPP + LL D S VG
Sbjct: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
Query: 106 IGVGEDAAKLEADYGVWCAAPVDLEDACNXXXXXXXXXXXXXXKGYAREVLGMAMEKPRR 165
I + DA K+ DY V +DL + N V + KP
Sbjct: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLA--SLTEMVTCRELPKPSN 247
Query: 166 VTMSNWEKRELDPAQVEYACIDAYVSYKLGE 196
+ M NWE L Q++YA DAY+S+ L E
Sbjct: 248 IRMGNWEAYVLSKQQLQYAATDAYISWHLYE 278
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,083,341
Number of extensions: 205627
Number of successful extensions: 367
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 11
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)