Os04g0129200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
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Os04g0129200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3'-5' exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.97 | 0.517 | 4.64 | -2.33 | 0.402 | 0.0437 | -0.806 | 3.19 | -0.0181 | 20.2 | 23 | 1822 | -- | -- |
| 124.61 | 0.52 | 4.72 | -3.21 | 0.374 | 0.4 | -0.737 | -- | -0.154 | 20.1 | 29.5 | 2204 | -- | -- |
| 122.51 | 0.516 | 4.64 | -2.3 | 0.421 | 0.0406 | -- | 2.98 | -0.021 | 20 | 23 | 1578 | -- | -- |
| 126 | 0.526 | 4.75 | -3.2 | 0.438 | 0.552 | -- | -- | -0.291 | 22.2 | 23 | 1578 | -- | -- |
| 131.41 | 0.534 | 4.64 | -2.46 | -- | 0.156 | -- | 3.03 | -0.0808 | -- | 24.52 | 2120 | -- | -- |
| 129.52 | 0.534 | 4.73 | -3.11 | 0.407 | -- | -0.665 | -- | -0.209 | 20.3 | -- | -- | -- | -- |
| 130.88 | 0.536 | 4.73 | -3.09 | 0.409 | -- | -- | -- | -0.209 | 20.2 | -- | -- | -- | -- |
| 133.27 | 0.538 | 4.72 | -3.23 | -- | 0.47 | -- | -- | -0.21 | -- | 27.38 | 2139 | -- | -- |
| 215.63 | 0.684 | 4.51 | -- | 0.427 | -2.08 | -- | -- | 0.758 | 20.5 | -27.49 | 47520 | -- | -- |
| 140.12 | 0.553 | 4.72 | -3.1 | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
| 383.32 | 0.916 | 4.65 | -- | 0.43 | -- | -- | -- | 0.136 | 19.7 | -- | -- | -- | -- |
| 225.83 | 0.7 | 4.5 | -- | -- | -2.08 | -- | -- | 0.753 | -- | -27.89 | 47520 | -- | -- |
| 393.28 | 0.926 | 4.64 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.21 | wind | 1.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 2 | 117.31 | wind | 1.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 3 | 117.76 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 4 | 117.83 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 9 | 117.98 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 10 | 118.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 13 | 118.09 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 18 | 118.18 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 19 | 118.23 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 28 | 118.45 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 34 | 118.56 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 45 | 118.66 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 49 | 118.70 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 54 | 118.75 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 60 | 118.90 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 61 | 118.92 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 72 | 118.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 75 | 119.01 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 82 | 119.05 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 19 | 14 |
| 87 | 119.09 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 99 | 119.14 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 100 | 119.15 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 10 | 13 |
| 129 | 119.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 141 | 119.22 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 170 | 119.26 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 278 | 119.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 342 | 119.46 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 19 | 21 |
| 351 | 119.47 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 426 | 119.53 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 471 | 119.57 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 564 | 119.66 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 618 | 119.71 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 643 | 119.76 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 687 | 119.83 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 697 | 119.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 718 | 119.90 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 744 | 119.95 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 757 | 119.97 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 758 | 119.97 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 773 | 120.00 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 775 | 120.01 | wind | 5.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 780 | 120.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 791 | 120.04 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 799 | 120.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 802 | 120.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 808 | 120.06 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 811 | 120.07 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 841 | 120.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 842 | 120.11 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 844 | 120.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 846 | 120.11 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 847 | 120.12 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 886 | 120.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 890 | 120.13 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 901 | 120.15 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 908 | 120.17 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 980 | 120.28 | wind | 5.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 996 | 120.31 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |