BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0129200 Os04g0129200|Os04g0129200
(298 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0129200 3\'-5\' exonuclease domain containing protein 499 e-141
Os01g0660800 3\'-5\' exonuclease domain containing protein 92 6e-19
Os01g0300000 3\'-5\' exonuclease domain containing protein 88 9e-18
Os04g0225100 3\'-5\' exonuclease domain containing protein 87 1e-17
Os01g0737600 3\'-5\' exonuclease domain containing protein 85 5e-17
Os07g0112400 3\'-5\' exonuclease domain containing protein 83 2e-16
Os01g0660500 83 3e-16
Os01g0737700 3\'-5\' exonuclease domain containing protein 82 4e-16
>Os04g0129200 3\'-5\' exonuclease domain containing protein
Length = 298
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/298 (84%), Positives = 251/298 (84%)
Query: 1 MNSGEPPASSSLGNAGEEEEEDDFYWDXXXXXXXXXXXXXXXXXKRRRLPDWXXXXXXXX 60
MNSGEPPASSSLGNAGEEEEEDDFYWD KRRRLPDW
Sbjct: 1 MNSGEPPASSSLGNAGEEEEEDDFYWDAEAEAELQAIEAAYAAAKRRRLPDWPSPNPVTA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXFRGNVKARYQPVMFNGSIVYCRTPSEVEKATRDILCKI 120
FRGNVKARYQPVMFNGSIVYCRTPSEVEKATRDILCKI
Sbjct: 61 SASASASGGCSPAPPWAPSPPAFRGNVKARYQPVMFNGSIVYCRTPSEVEKATRDILCKI 120
Query: 121 ETMKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLL 180
ETMKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLL
Sbjct: 121 ETMKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLL 180
Query: 181 EDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCR 240
EDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCR
Sbjct: 181 EDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCR 240
Query: 241 ELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLPDNNVEVEKETITAA 298
ELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLPDNNVEVEKETITAA
Sbjct: 241 ELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLPDNNVEVEKETITAA 298
>Os01g0660800 3\'-5\' exonuclease domain containing protein
Length = 199
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
+G D+EWRP P VA++QLC++R RC + ++++ VP L+ L ++ VG
Sbjct: 48 VGLDVEWRPSYGPAQNP--VALLQLCVDR-RCLIFQLLYADYVPGSLRRFLAGAADCFVG 104
Query: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPP-KRWSLASLTEMVTCRELPKPSNI 248
+ +D DA ++ +D+ + V DL LA +LG P + L ++ V +L KP +
Sbjct: 105 VGVDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRV 164
Query: 249 RMGNWEAYVLSKQQLQYAATDAYISWHL 276
M W+A LS +Q++YA DAY+S+ +
Sbjct: 165 TMSRWDASCLSNEQIRYACIDAYVSFEV 192
>Os01g0300000 3\'-5\' exonuclease domain containing protein
Length = 201
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
+G D EW+P KVAV+QLC C V+ + ++ VPP + LL D S VG
Sbjct: 47 VGLDCEWKP-NHVSWKTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVG 105
Query: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGF--PPKRWSLASLTEMVTCRELPKPSN 247
I + DA K+ DY V +DL + N +LG +R L V + KP
Sbjct: 106 IGVGEDAAKLEADYGVWCAAPVDLEDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPRR 165
Query: 248 IRMGNWEAYVLSKQQLQYAATDAYISWHLYE 278
+ M NWE L Q++YA DAY+S+ L E
Sbjct: 166 VTMSNWEKRELDPAQVEYACIDAYVSYKLGE 196
>Os04g0225100 3\'-5\' exonuclease domain containing protein
Length = 211
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
Query: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
+G D+EWRP P VAV+QLC++R RC V I+H+ VP L L D VG
Sbjct: 56 VGLDVEWRP---AAPVPGPVAVLQLCVDR-RCLVFQILHADYVPDALSRFLADPRFTFVG 111
Query: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPP-KRWSLASLTEMVTCRELPKPSNI 248
+ + +DA ++ Y + V +DL LA LG P +R L +L V ++ KP ++
Sbjct: 112 VGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHV 171
Query: 249 RMGNWEAYVLSKQQLQYAATDAYIS 273
R+ W+ LS+ Q +YA DA+ S
Sbjct: 172 RVSAWDKRNLSEDQFKYACADAFAS 196
>Os01g0737600 3\'-5\' exonuclease domain containing protein
Length = 208
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Query: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
+G D+EWRP P VAV+Q+C+ R RC + I+H+ VP L L D VG
Sbjct: 54 VGLDVEWRP-ATYYHGPGPVAVLQICVGR-RCLIFQILHADYVPDSLFDFLADGRFTFVG 111
Query: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWS-LASLTEMVTCRELPKPSNI 248
+ I +D K+ + + + V+ ++DL LA +G P R + L L V PKP ++
Sbjct: 112 VGIHDDVAKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPKPYHV 171
Query: 249 RMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSL 283
R+ W+++ L+ +Q+ YA DA+ S +EV +SL
Sbjct: 172 RVSAWDSWNLTPEQVMYACADAFAS---FEVGRSL 203
>Os07g0112400 3\'-5\' exonuclease domain containing protein
Length = 768
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 126 SGQVSLGFDLEWRPFPR---RGDPPCKVAVMQLCMERTRCYVMHIIHS-GVPPVLKSLLE 181
SG++ +G ++W P R RG PP A +QLC+ RC V H+ H+ +P L+ L
Sbjct: 59 SGRLLVGLGVQWTPLRRPLHRGSPPPPPATLQLCVGH-RCLVFHLAHADAIPAALRRFLA 117
Query: 182 DSSSVKVGICIDNDARKMFNDYDVHV---QPLMDLSNLANAKLGFPPKRWSLASLTEMVT 238
D VG ND R + YD+HV + L ++ + NA + R+ +
Sbjct: 118 DPRITFVGSGASNDRRMLSAYYDLHVASARELRAVAAMGNASMEAMADRF--------LG 169
Query: 239 CRELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHL 276
+ KP+N+ M W A LS +Q++YA DAY+++ L
Sbjct: 170 YPGIAKPTNVSMSAWHAPYLSIEQVEYACVDAYLAFRL 207
>Os01g0660500
Length = 382
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 119 KIETMKASGQVSLGFDLEWRPFPRRGDPPC-KVAVMQLCMERTRCYVMHIIHSG--VPPV 175
+I + G + +G D EWR C KVAV+QLC+ R RC + I +G VP
Sbjct: 207 EIARERPQGGLIVGIDTEWRTDHLPNGKTCYKVAVLQLCVGR-RCLLFQIYQAGNMVPHE 265
Query: 176 LKSLLEDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPP-KRWSLASLT 234
L L D S VG+ ++ND +++ ND ++ V +DL A A LG P R L L
Sbjct: 266 LAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLA 325
Query: 235 EMVTCRELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQS 282
V + K NI W L+ +Q+ YA DAY+S+ + L S
Sbjct: 326 LTVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRLLS 373
>Os01g0737700 3\'-5\' exonuclease domain containing protein
Length = 233
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 131 LGFDLEWRP---FPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSV 186
+G D+EW P F G VAV+Q+C+ R RC V IIH+ VP L L D
Sbjct: 79 VGLDVEWNPASGFCALG----PVAVLQICVGR-RCLVFQIIHADYVPDQLGDFLGDGRFT 133
Query: 187 KVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWS-LASLTEMVTCRELPKP 245
VG+ I +D K+ YD+ V+ +DL LA +G P R + L L V + KP
Sbjct: 134 FVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKP 193
Query: 246 SNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLPDN 286
++R+ W++ L+ Q+ YA DA+ S +EV +SL D+
Sbjct: 194 HHVRVSAWDSRQLTLDQVMYACADAFAS---FEVGRSLYDD 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,627,164
Number of extensions: 364454
Number of successful extensions: 867
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 9
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)