Os01g0660800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0660800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : 3'-5' exonuclease domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.6 | 0.619 | 5.4 | 0.941 | 2.94 | -0.961 | 0.302 | -1.2 | 0.35 | 18.7 | 29.6 | 278 | -- | -- |
| 174.26 | 0.615 | 5.42 | 0.855 | 2.9 | -1.05 | 0.295 | -- | 0.338 | 18.7 | 29.6 | 299 | -- | -- |
| 173.58 | 0.614 | 5.39 | 1.02 | 2.89 | -0.929 | -- | -1.81 | 0.341 | 18.8 | 29.38 | 299 | -- | -- |
| 174.41 | 0.615 | 5.41 | 0.813 | 2.89 | -1.11 | -- | -- | 0.323 | 18.7 | 29.5 | 299 | -- | -- |
| 415.73 | 0.95 | 5.43 | 0.537 | -- | -2.87 | -- | -0.964 | -0.0584 | -- | 28.2 | 479 | -- | -- |
| 201.58 | 0.666 | 5.42 | 0.993 | 3.35 | -- | 1.05 | -- | 0.335 | 18.5 | -- | -- | -- | -- |
| 204.34 | 0.669 | 5.42 | 0.978 | 3.35 | -- | -- | -- | 0.338 | 18.5 | -- | -- | -- | -- |
| 415.71 | 0.95 | 5.44 | 0.373 | -- | -2.91 | -- | -- | -0.0996 | -- | 28.21 | 479 | -- | -- |
| 191.02 | 0.644 | 5.42 | -- | 2.86 | -1.2 | -- | -- | 0.249 | 18.8 | 29.5 | 299 | -- | -- |
| 788.22 | 1.31 | 5.35 | 0.895 | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
| 229.57 | 0.709 | 5.44 | -- | 3.34 | -- | -- | -- | 0.229 | 18.5 | -- | -- | -- | -- |
| 419.23 | 0.954 | 5.45 | -- | -- | -2.97 | -- | -- | -0.142 | -- | 28.2 | 487 | -- | -- |
| 809.37 | 1.33 | 5.38 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.83 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 8 | 169.71 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 28 | 172.97 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 35 | 173.38 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 47 | 173.93 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 52 | 174.07 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 58 | 174.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 73 | 174.69 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 82 | 174.78 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 141 | 175.45 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 145 | 175.50 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 152 | 175.67 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 9 |
| 177 | 175.88 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 274 | 175.96 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 367 | 176.63 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 403 | 176.83 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 11 |
| 415 | 176.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 419 | 176.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 451 | 177.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 461 | 177.12 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 498 | 177.39 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 505 | 177.46 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 542 | 177.80 | temperature | 25 | 10 | > th | dose dependent | sin | 18 | NA |
| 590 | 177.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 593 | 177.98 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |
| 595 | 177.99 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 17 |
| 609 | 178.06 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 625 | 178.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 638 | 178.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 20 |
| 703 | 178.56 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 704 | 178.56 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 745 | 178.73 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 961 | 179.56 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 964 | 179.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 994 | 179.67 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 16 | 6 |