BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0660800 Os01g0660800|J075052N14
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0660800 3\'-5\' exonuclease domain containing protein 399 e-112
Os04g0225100 3\'-5\' exonuclease domain containing protein 191 2e-49
Os01g0737600 3\'-5\' exonuclease domain containing protein 189 2e-48
Os01g0737700 3\'-5\' exonuclease domain containing protein 176 1e-44
Os01g0660500 160 8e-40
Os01g0300000 3\'-5\' exonuclease domain containing protein 145 2e-35
Os07g0112400 3\'-5\' exonuclease domain containing protein 115 2e-26
Os01g0299700 3\'-5\' exonuclease domain containing protein 108 3e-24
Os07g0112200 106 9e-24
Os04g0129200 3\'-5\' exonuclease domain containing protein 91 4e-19
Os11g0222250 68 4e-12
>Os01g0660800 3\'-5\' exonuclease domain containing protein
Length = 199
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MAAADTDTYVTEVAFGDAVITTTVTSSGAAVEGWLREVRAAYGPGLIVGLDVEWRPSYGP 60
MAAADTDTYVTEVAFGDAVITTTVTSSGAAVEGWLREVRAAYGPGLIVGLDVEWRPSYGP
Sbjct: 1 MAAADTDTYVTEVAFGDAVITTTVTSSGAAVEGWLREVRAAYGPGLIVGLDVEWRPSYGP 60
Query: 61 AQNPVALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGL 120
AQNPVALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGL
Sbjct: 61 AQNPVALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGL 120
Query: 121 TVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIR 180
TVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIR
Sbjct: 121 TVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIR 180
Query: 181 YACIDAYVSFEVGRRLLRA 199
YACIDAYVSFEVGRRLLRA
Sbjct: 181 YACIDAYVSFEVGRRLLRA 199
>Os04g0225100 3\'-5\' exonuclease domain containing protein
Length = 211
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 125/187 (66%), Gaps = 4/187 (2%)
Query: 13 VAFGDAVITTTVTSSGAAVEGWLRE---VRAAYGPGLIVGLDVEWRPSYGPAQNPVALLQ 69
++F + T+T SG VE WL E + + G L+VGLDVEWRP+ P PVA+LQ
Sbjct: 18 LSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRPA-APVPGPVAVLQ 76
Query: 70 LCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLR 129
LCVDRRCL+FQ+L+ADYVP +L RFLA FVGVGV DA RL +GL V DLR
Sbjct: 77 LCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLR 136
Query: 130 PLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAYVS 189
LAA LGRP+L +AGL+A+VR VMG + KP V +S WD LS +Q +YAC DA+ S
Sbjct: 137 ALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 196
Query: 190 FEVGRRL 196
EVGRRL
Sbjct: 197 REVGRRL 203
>Os01g0737600 3\'-5\' exonuclease domain containing protein
Length = 208
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 123/191 (64%), Gaps = 10/191 (5%)
Query: 13 VAFGDAVITTTVTSSGAAVEGWLREV------RAAYGPGLIVGLDVEWRP-SYGPAQNPV 65
VAF + I TTVT SG V+ WL E+ R Y L+VGLDVEWRP +Y PV
Sbjct: 16 VAFDEDYIHTTVTYSGDDVDDWLDEILRIHRRRLNY---LVVGLDVEWRPATYYHGPGPV 72
Query: 66 ALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANT 125
A+LQ+CV RRCLIFQ+L+ADYVP SL FLA FVGVG+ D +L HGL V N
Sbjct: 73 AVLQICVGRRCLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENV 132
Query: 126 ADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACID 185
DLR LAAQ +G+P L AGLQ +VR VMG KP V +S WD+ L+ EQ+ YAC D
Sbjct: 133 VDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPKPYHVRVSAWDSWNLTPEQVMYACAD 192
Query: 186 AYVSFEVGRRL 196
A+ SFEVGR L
Sbjct: 193 AFASFEVGRSL 203
>Os01g0737700 3\'-5\' exonuclease domain containing protein
Length = 233
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 13 VAFGDAVITTTVTSSGAAVEGWLREVRAAYG---PGLIVGLDVEWRPSYGP-AQNPVALL 68
VAF + I TTVT SG VE WL E+ + LIVGLDVEW P+ G A PVA+L
Sbjct: 41 VAFDEDKIYTTVTDSGEEVEEWLDEIVRIHHRRLDHLIVGLDVEWNPASGFCALGPVAVL 100
Query: 69 QLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADL 128
Q+CV RRCL+FQ+++ADYVP L FL FVGVG+ D ++L + + L V N DL
Sbjct: 101 QICVGRRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDL 160
Query: 129 RPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAYV 188
R LAAQ +G+P L GLQ +V VM + KP V +S WD+ L+ +Q+ YAC DA+
Sbjct: 161 RYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFA 220
Query: 189 SFEVGRRL 196
SFEVGR L
Sbjct: 221 SFEVGRSL 228
>Os01g0660500
Length = 382
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 121/188 (64%), Gaps = 6/188 (3%)
Query: 16 GDAV-ITTTVTSSGAAVEGWLREV-RAAYGPGLIVGLDVEWRPSYGPAQN---PVALLQL 70
GD + I TT+TSS + ++ E+ R GLIVG+D EWR + P VA+LQL
Sbjct: 185 GDTIPIHTTITSSHSLAAQFINEIARERPQGGLIVGIDTEWRTDHLPNGKTCYKVAVLQL 244
Query: 71 CVDRRCLIFQLLYA-DYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLR 129
CV RRCL+FQ+ A + VP L FLA + FVGV V+ D +RL++D L VA DLR
Sbjct: 245 CVGRRCLLFQIYQAGNMVPHELAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDLR 304
Query: 130 PLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAYVS 189
AA LG+PEL++AGL+ + VMGA + K + +T SRW L+ EQ+ YACIDAYVS
Sbjct: 305 YAAAAVLGQPELARAGLKRLALTVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYVS 364
Query: 190 FEVGRRLL 197
+E+GRRLL
Sbjct: 365 YEIGRRLL 372
>Os01g0300000 3\'-5\' exonuclease domain containing protein
Length = 201
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 13 VAFGDAVITTTVTSSGAAVEGWLREVRAAY--GPGLIVGLDVEWRPSYGPAQ-NPVALLQ 69
V FG A I TTVTS AA + W R VRAA G GLIVGLD EW+P++ + + VA+LQ
Sbjct: 10 VRFGSATIDTTVTSDVAAADEWARGVRAAARGGRGLIVGLDCEWKPNHVSWKTSKVAVLQ 69
Query: 70 LCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADL 128
LC +R CL+ QL YA+ VP ++ L + VG+GV +DA +L D+G+ A DL
Sbjct: 70 LCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAAPVDL 129
Query: 129 RPLAAQRLGRPELSQ-AGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAY 187
+RLG + GL+ R V+G + KP+RVTMS W+ L Q+ YACIDAY
Sbjct: 130 EDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPRRVTMSNWEKRELDPAQVEYACIDAY 189
Query: 188 VSFEVGRRLL 197
VS+++G R+L
Sbjct: 190 VSYKLGERVL 199
>Os07g0112400 3\'-5\' exonuclease domain containing protein
Length = 768
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 21/199 (10%)
Query: 7 DTYVTEVAFGDAVITTTVTSSGAAVEGWLREVRAAYG------PGLIVGLDVEWRPSY-- 58
DTYV V G + + TVT+ A W+ R +G GL V + V+W P
Sbjct: 563 DTYVVRV--GASRVVATVTARPAVARRWVFSTRWRHGRRLRSGAGLTVAMGVQWTPPSRA 620
Query: 59 --GPAQNPVALLQLCVDRRCLIFQLLYADYVPGSLRRFLA-GAADCFVGVGVDKDAERLS 115
G A+ LQLCV RCL+FQ+ + P +LRRFLA G FVG G+ D +L+
Sbjct: 621 LAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLA 680
Query: 116 DDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMG-ADLVKPQRVTMSRWDASCL 174
HGL VA T +LR + + + + + ++G A + KP V SRWDA L
Sbjct: 681 AHHGLHVACTRELRAVTG-------MGSSSMARMAEELLGLAGIKKPAAVGRSRWDAPKL 733
Query: 175 SNEQIRYACIDAYVSFEVG 193
S +Q++YAC+DA++S +G
Sbjct: 734 SKKQVKYACVDAFLSHRLG 752
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 100/199 (50%), Gaps = 20/199 (10%)
Query: 9 YVTEVAFGDAVITTTVTSSGAAVEGWLREVRAAY-----GPGLIVGLDVEWRPSYGPAQN 63
Y VA D + VT+ A W+ R + L+VGL V+W P P
Sbjct: 22 YTVHVA--DRRVIALVTAHPAYARRWVHTTRWLHHRLLRSGRLLVGLGVQWTPLRRPLHR 79
Query: 64 -----PVALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDH 118
P A LQLCV RCL+F L +AD +P +LRRFLA FVG G D LS +
Sbjct: 80 GSPPPPPATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYY 139
Query: 119 GLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMG-ADLVKPQRVTMSRWDASCLSNE 177
L VA+ +LR +AA + A ++A+ +G + KP V+MS W A LS E
Sbjct: 140 DLHVASARELRAVAA-------MGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIE 192
Query: 178 QIRYACIDAYVSFEVGRRL 196
Q+ YAC+DAY++F + L
Sbjct: 193 QVEYACVDAYLAFRLAVHL 211
>Os01g0299700 3\'-5\' exonuclease domain containing protein
Length = 237
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 105/184 (57%), Gaps = 13/184 (7%)
Query: 13 VAFGDAVITTTVTSSGAAVEGWLREVRAAYGP------GLIVGLDVEWRP--SYGPAQNP 64
V+FG A I TTVTS AA + W+R VRA+ GL+VGLD EW+P PA P
Sbjct: 29 VSFGSAAIDTTVTSDAAAADEWVRRVRASAATTPRGGGGLLVGLDCEWKPCDHLWPAVAP 88
Query: 65 -VALLQLCVDRRCLIFQLLY---ADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGL 120
VA+LQLC CLI QLL+ A VP + LA + VG+G+ ++A +L+D +G+
Sbjct: 89 TVAILQLCAGDSCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGYGV 148
Query: 121 TVANTADLRPLAAQRLGR-PELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQI 179
A DL + +RLGR P + GL+ VR V+G + KP VT S W+ L Q+
Sbjct: 149 RCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAAQV 208
Query: 180 RYAC 183
RYAC
Sbjct: 209 RYAC 212
>Os07g0112200
Length = 159
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 83/146 (56%), Gaps = 10/146 (6%)
Query: 50 LDVEWRPSYGPAQNPVALLQLCVDRRCLIFQLLYADYVPGS-LRRFLAGAADCFVGVGVD 108
+ V+W P + A LQLC RCL+FQL +AD + LRRFLA FVG GV
Sbjct: 1 MGVQWTPPFRRATIRPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVR 60
Query: 109 KDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLV--KPQRVTM 166
D +L + HGL VA T +LR LA + +Q + +G D V KP++V
Sbjct: 61 SDCRKLEEQHGLEVARTVELRSLAG-------MGNTSMQRMAEEHLGWDGVTTKPRKVGT 113
Query: 167 SRWDASCLSNEQIRYACIDAYVSFEV 192
SRWDA LS EQ++YAC+DAY+SF +
Sbjct: 114 SRWDARRLSKEQVQYACVDAYLSFRL 139
>Os04g0129200 3\'-5\' exonuclease domain containing protein
Length = 298
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 48 VGLDVEWRPSYGPAQNP--VALLQLCVDR-RCLIFQLLYADYVPGSLRRFLAGAADCFVG 104
+G D+EWRP P VA++QLC++R RC + ++++ VP L+ L ++ VG
Sbjct: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLEDSSSVKVG 189
Query: 105 VGVDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRV 164
+ +D DA ++ +D+ + V DL LA +LG P + L ++ V +L KP +
Sbjct: 190 ICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPP-KRWSLASLTEMVTCRELPKPSNI 248
Query: 165 TMSRWDASCLSNEQIRYACIDAYVSFEV 192
M W+A LS +Q++YA DAY+S+ +
Sbjct: 249 RMGNWEAYVLSKQQLQYAATDAYISWHL 276
>Os11g0222250
Length = 230
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 16 GDAV-ITTTVTSSGAAVEGWLREVRAAYGPGLIVGLDVEWRPSYGPAQNP---VALLQLC 71
GDA+ I TT+T ++ E+ + +D EWR + P V +LQLC
Sbjct: 79 GDAMAIRTTITLLHYLTTQFINEI--------ALSIDTEWREDHEPDDKKCYKVVVLQLC 130
Query: 72 VDRRCLIFQLLYA-DYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLRP 130
V+RRCL+FQL A + VP L FLA A FVGVGVD RL+++ L VA DLR
Sbjct: 131 VNRRCLVFQLYQASNEVPRELAEFLADAGVRFVGVGVDGGVRRLANECNLRVACAVDLRD 190
Query: 131 LAAQRLGRPELSQAGLQ 147
AA LGRPEL++ G +
Sbjct: 191 AAAAVLGRPELARVGAE 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,639,814
Number of extensions: 262795
Number of successful extensions: 563
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 12
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)