Os07g0112400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0112400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : 3'-5' exonuclease domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.26 | 0.528 | 9.86 | 0.678 | 0.61 | -1.66 | 0.758 | -1.31 | -0.327 | 9.26 | 21.5 | 1412 | -- | -- |
| 126.97 | 0.525 | 9.8 | 0.903 | 0.62 | -1.43 | 0.791 | -- | -0.221 | 9.21 | 22.1 | 1450 | -- | -- |
| 128.31 | 0.528 | 9.86 | 0.691 | 0.609 | -1.66 | -- | -1.34 | -0.326 | 9.34 | 21.41 | 1412 | -- | -- |
| 129.18 | 0.529 | 9.81 | 0.923 | 0.617 | -1.42 | -- | -- | -0.227 | 9.32 | 22.14 | 1459 | -- | -- |
| 136.68 | 0.545 | 9.85 | 0.603 | -- | -1.37 | -- | -0.746 | -0.284 | -- | 22.2 | 848 | -- | -- |
| 200.97 | 0.665 | 9.92 | 0.373 | 0.628 | -- | 0.697 | -- | -0.698 | 9.57 | -- | -- | -- | -- |
| 202.76 | 0.667 | 9.91 | 0.4 | 0.624 | -- | -- | -- | -0.697 | 9.7 | -- | -- | -- | -- |
| 138.62 | 0.548 | 9.84 | 0.828 | -- | -1.39 | -- | -- | -0.228 | -- | 22.2 | 853 | -- | -- |
| 147.63 | 0.566 | 9.83 | -- | 0.547 | -1.13 | -- | -- | -0.377 | 9.06 | 22.3 | 1153 | -- | -- |
| 225.85 | 0.702 | 9.93 | 0.395 | -- | -- | -- | -- | -0.696 | -- | -- | -- | -- | -- |
| 206.98 | 0.673 | 9.93 | -- | 0.623 | -- | -- | -- | -0.741 | 9.65 | -- | -- | -- | -- |
| 156 | 0.582 | 9.86 | -- | -- | -1.21 | -- | -- | -0.367 | -- | 22.4 | 842 | -- | -- |
| 229.96 | 0.708 | 9.94 | -- | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 24 | 130.70 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 56 | 131.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 59 | 131.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 82 | 132.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 99 | 132.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 101 | 132.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 125 | 132.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 153 | 132.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 289 | 134.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 312 | 134.37 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 322 | 134.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 328 | 134.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 336 | 134.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 513 | 135.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 797 | 137.93 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 921 | 138.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 984 | 139.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |