BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0112400 Os07g0112400|Os07g0112400
(768 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0112400 3\'-5\' exonuclease domain containing protein 1102 0.0
Os07g0112200 174 3e-43
Os01g0660800 3\'-5\' exonuclease domain containing protein 109 9e-24
Os07g0112300 108 1e-23
Os01g0737600 3\'-5\' exonuclease domain containing protein 101 2e-21
Os04g0225100 3\'-5\' exonuclease domain containing protein 100 3e-21
Os01g0737700 3\'-5\' exonuclease domain containing protein 100 6e-21
Os01g0660500 99 1e-20
Os01g0300000 3\'-5\' exonuclease domain containing protein 86 8e-17
>Os07g0112400 3\'-5\' exonuclease domain containing protein
Length = 768
Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/756 (75%), Positives = 574/756 (75%)
Query: 1 MDAAATRVSTRLRRSTQTHAAYTVHVADRRVIALVTAHPAYARRWVHTTRWXXXXXXXXX 60
MDAAATRVSTRLRRSTQTHAAYTVHVADRRVIALVTAHPAYARRWVHTTRW
Sbjct: 1 MDAAATRVSTRLRRSTQTHAAYTVHVADRRVIALVTAHPAYARRWVHTTRWLHHRLLRSG 60
Query: 61 XXXXXXXXQWTXXXXXXXXXXXXXXXATLQLCVGHRCLVFHLAHADAIPAALRRFLADPR 120
QWT ATLQLCVGHRCLVFHLAHADAIPAALRRFLADPR
Sbjct: 61 RLLVGLGVQWTPLRRPLHRGSPPPPPATLQLCVGHRCLVFHLAHADAIPAALRRFLADPR 120
Query: 121 ITFVGSGASNDRRMLSAYYDLHVASARELRAVAAMGNASMEAMADRFLGYPGIAKPTNVS 180
ITFVGSGASNDRRMLSAYYDLHVASARELRAVAAMGNASMEAMADRFLGYPGIAKPTNVS
Sbjct: 121 ITFVGSGASNDRRMLSAYYDLHVASARELRAVAAMGNASMEAMADRFLGYPGIAKPTNVS 180
Query: 181 MSAWHAPYLSIEQVEYACVDAYLAFRLAVHLCXXXXXXXXXXXXXXXXXXXXXXVYHHXX 240
MSAWHAPYLSIEQVEYACVDAYLAFRLAVHLC VYHH
Sbjct: 181 MSAWHAPYLSIEQVEYACVDAYLAFRLAVHLCPAPARQPVLRAPPPPPPAPRAPVYHHPL 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTHWALVATAVDDDASES 300
QTHWALVATAVDDDASES
Sbjct: 241 PLGPRVAVLAAPAPRPARHAPVRARVAPPVYRAVARAEPAAAQTHWALVATAVDDDASES 300
Query: 301 EYSSKITDNVRPRVAAXXXXXXXXXXXGLSMIHSSSYASDDHVFSSDDFELVGHGLLSSD 360
EYSSKITDNVRPRVAA GLSMIHSSSYASDDHVFSSDDFELVGHGLLSSD
Sbjct: 301 EYSSKITDNVRPRVAASDSDIEEEDDDGLSMIHSSSYASDDHVFSSDDFELVGHGLLSSD 360
Query: 361 DEDGYEDFVLGMGALNXXXXXXXXYNGNTGSIGILTVQSYNEHSSIGILTVENYDMAGTE 420
DEDGYEDFVLGMGALN YNGNTGSIGILTVQSYNEHSSIGILTVENYDMAGTE
Sbjct: 361 DEDGYEDFVLGMGALNIDIDDDDDYNGNTGSIGILTVQSYNEHSSIGILTVENYDMAGTE 420
Query: 421 EMFVRNGVATLEELEEDDIVTGAGTVTVDEGGGGYEAFEGNSQAFXXXXXXXXXXXXXXX 480
EMFVRNGVATLEELEEDDIVTGAGTVTVDEGGGGYEAFEGNSQAF
Sbjct: 421 EMFVRNGVATLEELEEDDIVTGAGTVTVDEGGGGYEAFEGNSQAFDDVEEGGYVEDDWYD 480
Query: 481 XXXXXXXXXXTSGGVFGSRSCSVACLRNQATSLGVLFAARAMAGKRPGDAPAGDXXXXXX 540
TSGGVFGSRSCSVACLRNQATSLGVLFAARAMAGKRPGDAPAGD
Sbjct: 481 EDEEELLDYDTSGGVFGSRSCSVACLRNQATSLGVLFAARAMAGKRPGDAPAGDTAAKRA 540
Query: 541 XXXXXXXXXXVSARLRRSETKHDTYXXXXXXXXXXXXXXXXXXXXXXXXFSTRWRHGRRL 600
VSARLRRSETKHDTY FSTRWRHGRRL
Sbjct: 541 RTAARRQKTTVSARLRRSETKHDTYVVRVGASRVVATVTARPAVARRWVFSTRWRHGRRL 600
Query: 601 RSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAALRRFLA 660
RSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAALRRFLA
Sbjct: 601 RSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAALRRFLA 660
Query: 661 DGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTGMGSSSMARMAEELLGLAGIKKP 720
DGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTGMGSSSMARMAEELLGLAGIKKP
Sbjct: 661 DGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTGMGSSSMARMAEELLGLAGIKKP 720
Query: 721 AAVGRSRWDAPKLSKKQVKYACVDAFLSHRLGVHVG 756
AAVGRSRWDAPKLSKKQVKYACVDAFLSHRLGVHVG
Sbjct: 721 AAVGRSRWDAPKLSKKQVKYACVDAFLSHRLGVHVG 756
>Os07g0112200
Length = 159
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 109/148 (73%), Gaps = 7/148 (4%)
Query: 610 MGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAA-LRRFLADGGVAAFV 668
MGVQWTPP R A RPGTLQLC G RCLVFQ+A +A A LRRFLAD V FV
Sbjct: 1 MGVQWTPPFRR----ATIRPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVV-FV 55
Query: 669 GYGIRSDCRKLAAHHGLHVACTRELRAVTGMGSSSMARMAEELLGLAGI-KKPAAVGRSR 727
GYG+RSDCRKL HGL VA T ELR++ GMG++SM RMAEE LG G+ KP VG SR
Sbjct: 56 GYGVRSDCRKLEEQHGLEVARTVELRSLAGMGNTSMQRMAEEHLGWDGVTTKPRKVGTSR 115
Query: 728 WDAPKLSKKQVKYACVDAFLSHRLGVHV 755
WDA +LSK+QV+YACVDA+LS RL VHV
Sbjct: 116 WDARRLSKEQVQYACVDAYLSFRLAVHV 143
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 88/126 (69%), Gaps = 2/126 (1%)
Query: 88 TLQLCVGHRCLVFHLAHADAIPAA-LRRFLADPRITFVGSGASNDRRMLSAYYDLHVASA 146
TLQLC GHRCLVF LAHADA A LRRFLAD R+ FVG G +D R L + L VA
Sbjct: 18 TLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEVART 77
Query: 147 RELRAVAAMGNASMEAMADRFLGYPGI-AKPTNVSMSAWHAPYLSIEQVEYACVDAYLAF 205
ELR++A MGN SM+ MA+ LG+ G+ KP V S W A LS EQV+YACVDAYL+F
Sbjct: 78 VELRSLAGMGNTSMQRMAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYACVDAYLSF 137
Query: 206 RLAVHL 211
RLAVH+
Sbjct: 138 RLAVHV 143
>Os01g0660800 3\'-5\' exonuclease domain containing protein
Length = 199
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 594 WRHGRRLRSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPA 653
W R G GL V + V+W P G A+ LQLCV RCL+FQ+ + P
Sbjct: 34 WLREVRAAYGPGLIVGLDVEWRPSY----GPAQNPVALLQLCVDRRCLIFQLLYADYVPG 89
Query: 654 ALRRFLADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTG-------MGSSSMAR 706
+LRRFLA G FVG G+ D +L+ HGL VA T +LR + + + +
Sbjct: 90 SLRRFLA-GAADCFVGVGVDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQA 148
Query: 707 MAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLG 752
+ ++G A + KP V SRWDA LS +Q++YAC+DA++S +G
Sbjct: 149 VVRAVMG-ADLVKPQRVTMSRWDASCLSNEQIRYACIDAYVSFEVG 193
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 87 ATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASA 146
A LQLCV RCL+F L +AD +P +LRRFLA FVG G D LS + L VA+
Sbjct: 66 ALLQLCVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANT 125
Query: 147 RELRAVAA-------MGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYACV 199
+LR +AA + A ++A+ +G + KP V+MS W A LS EQ+ YAC+
Sbjct: 126 ADLRPLAAQRLGRPELSQAGLQAVVRAVMG-ADLVKPQRVTMSRWDASCLSNEQIRYACI 184
Query: 200 DAYLAFRLAVHL 211
DAY++F + L
Sbjct: 185 DAYVSFEVGRRL 196
>Os07g0112300
Length = 102
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Query: 665 AAFVGYGIRSDCRKLAAHHGLHVACTRELR-AVTGMGSSSMARMAEELLGLAGIKKPAAV 723
AAFV + +R DCRKL HHGL VA ELR V GMG++SM RMAEE LGL G+ KP V
Sbjct: 6 AAFVAHNVRHDCRKLEEHHGLEVARGVELRRLVAGMGNASMKRMAEEHLGLVGVWKPRRV 65
Query: 724 GRSRWDAPKLSKKQVKYACVDAFLSHRLGVHV 755
G SRW A +L+K QV+YACVDA LS LGVH+
Sbjct: 66 GTSRWHARRLTKGQVEYACVDACLSFHLGVHL 97
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 116 LADPRITFVGSGASNDRRMLSAYYDLHVASARELR-AVAAMGNASMEAMADRFLGYPGIA 174
+AD R FV +D R L ++ L VA ELR VA MGNASM+ MA+ LG G+
Sbjct: 1 MADARAAFVAHNVRHDCRKLEEHHGLEVARGVELRRLVAGMGNASMKRMAEEHLGLVGVW 60
Query: 175 KPTNVSMSAWHAPYLSIEQVEYACVDAYLAFRLAVHL 211
KP V S WHA L+ QVEYACVDA L+F L VHL
Sbjct: 61 KPRRVGTSRWHARRLTKGQVEYACVDACLSFHLGVHL 97
>Os01g0737600 3\'-5\' exonuclease domain containing protein
Length = 208
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 596 HGRRLRSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAAL 655
H RRL L V + V+W P + G LQ+CVG RCL+FQ+ + P +L
Sbjct: 45 HRRRLNY---LVVGLDVEWRPATYYHGPGPV---AVLQICVGRRCLIFQILHADYVPDSL 98
Query: 656 RRFLADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAV-------TGMGSSSMARMA 708
FLADG FVG GI D KL +HHGL V +LR + + S+ + +
Sbjct: 99 FDFLADGRF-TFVGVGIHDDVAKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLV 157
Query: 709 EELLGLAGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLG 752
E++G+ KP V S WD+ L+ +QV YAC DAF S +G
Sbjct: 158 REVMGVWA-PKPYHVRVSAWDSWNLTPEQVMYACADAFASFEVG 200
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 87 ATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASA 146
A LQ+CVG RCL+F + HAD +P +L FLAD R TFVG G +D L +++ L V +
Sbjct: 73 AVLQICVGRRCLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENV 132
Query: 147 RELRAVA-------AMGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYACV 199
+LR +A A+ +A ++ + +G KP +V +SAW + L+ EQV YAC
Sbjct: 133 VDLRYLAAQTIGKPALRSAGLQGLVREVMGVWA-PKPYHVRVSAWDSWNLTPEQVMYACA 191
Query: 200 DAYLAFRL 207
DA+ +F +
Sbjct: 192 DAFASFEV 199
>Os04g0225100 3\'-5\' exonuclease domain containing protein
Length = 211
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 87 ATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASA 146
A LQLCV RCLVF + HAD +P AL RFLADPR TFVG G +D L Y L V A
Sbjct: 73 AVLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRA 132
Query: 147 RELRAVAA-------MGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYACV 199
+LRA+AA + A + A+ +G + KP +V +SAW LS +Q +YAC
Sbjct: 133 VDLRALAADTLGRPDLRRAGLRALVREVMGV-QMDKPHHVRVSAWDKRNLSEDQFKYACA 191
Query: 200 DAY 202
DA+
Sbjct: 192 DAF 194
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 82/160 (51%), Gaps = 20/160 (12%)
Query: 603 GAGLTVAMGVQWTPPSRALAGGAEPRPG---TLQLCVGSRCLVFQVAQGNAFPAALRRFL 659
G L V + V+W P A P PG LQLCV RCLVFQ+ + P AL RFL
Sbjct: 51 GHPLVVGLDVEWRP--------AAPVPGPVAVLQLCVDRRCLVFQILHADYVPDALSRFL 102
Query: 660 ADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTG--MGSSSMAR-----MAEELL 712
AD FVG G+R D +L +GL V +LRA+ +G + R + E++
Sbjct: 103 ADPRF-TFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVM 161
Query: 713 GLAGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLG 752
G+ + KP V S WD LS+ Q KYAC DAF S +G
Sbjct: 162 GVQ-MDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVG 200
>Os01g0737700 3\'-5\' exonuclease domain containing protein
Length = 233
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 87 ATLQLCVGHRCLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASA 146
A LQ+CVG RCLVF + HAD +P L FL D R TFVG G +D L +YDL V +A
Sbjct: 98 AVLQICVGRRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENA 157
Query: 147 RELRAVAA--MGNASMEAMADRFLGYP----GIAKPTNVSMSAWHAPYLSIEQVEYACVD 200
+LR +AA +G ++ + + L + + KP +V +SAW + L+++QV YAC D
Sbjct: 158 VDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACAD 217
Query: 201 AYLAFRL 207
A+ +F +
Sbjct: 218 AFASFEV 224
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 596 HGRRLRSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSRCLVFQVAQGNAFPAAL 655
H RRL L V + V+W P S A G LQ+CVG RCLVFQ+ + P L
Sbjct: 70 HHRRLDH---LIVGLDVEWNPASGFCALGP---VAVLQICVGRRCLVFQIIHADYVPDQL 123
Query: 656 RRFLADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTGMGSSSMARMAEELLGL- 714
FL DG FVG GI D KL H+ L V +LR + A + L GL
Sbjct: 124 GDFLGDGRF-TFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLV 182
Query: 715 -----AGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLG 752
++KP V S WD+ +L+ QV YAC DAF S +G
Sbjct: 183 WEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVG 225
>Os01g0660500
Length = 382
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 599 RLRSGAGLTVAMGVQWTPPSRALAGGAEP-RPGTLQLCVGSRCLVFQVAQ-GNAFPAALR 656
R R GL V + +W + L G + LQLCVG RCL+FQ+ Q GN P L
Sbjct: 210 RERPQGGLIVGIDTEWR--TDHLPNGKTCYKVAVLQLCVGRRCLLFQIYQAGNMVPHELA 267
Query: 657 RFLADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELR--AVTGMGSSSMARMAEELLGL 714
FLAD V FVG + +D ++LA L VAC +LR A +G +AR + L L
Sbjct: 268 EFLADPSVR-FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLAL 326
Query: 715 ----AGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLG 752
A ++K + +SRW P L+ +QV YAC+DA++S+ +G
Sbjct: 327 TVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYVSYEIG 368
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 87 ATLQLCVGHRCLVFHLAHA-DAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVAS 145
A LQLCVG RCL+F + A + +P L FLADP + FVG +ND + L+ +L VA
Sbjct: 240 AVLQLCVGRRCLLFQIYQAGNMVPHELAEFLADPSVRFVGVAVNNDMQRLANDCNLRVAC 299
Query: 146 ARELRAVAA-------MGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYAC 198
A +LR AA + A ++ +A +G + K N++ S W P L+ EQV YAC
Sbjct: 300 AVDLRYAAAAVLGQPELARAGLKRLALTVMGA-HMEKEKNITKSRWGEPTLTWEQVNYAC 358
Query: 199 VDAYLAFRLAVHL 211
+DAY+++ + L
Sbjct: 359 IDAYVSYEIGRRL 371
>Os01g0300000 3\'-5\' exonuclease domain containing protein
Length = 201
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 594 WRHGRRL--RSGAGLTVAMGVQWTPPSRALAGGAEPRPGTLQLCVGSR-CLVFQVAQGNA 650
W G R R G GL V + +W P + LQLC G R CLV Q+ N
Sbjct: 31 WARGVRAAARGGRGLIVGLDCEWKPNH---VSWKTSKVAVLQLCAGERFCLVLQLFYANR 87
Query: 651 FPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHG--------LHVACTRELRAVTGMGSS 702
P A+ L D V VG G+ D KL A +G L AC R L V
Sbjct: 88 VPPAVADLLGDPSVR-LVGIGVGEDAAKLEADYGVWCAAPVDLEDACNRRLGLVGTGRRL 146
Query: 703 SMARMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLGVHV 755
+ A E+LG+A ++KP V S W+ +L QV+YAC+DA++S++LG V
Sbjct: 147 GLKGYAREVLGMA-MEKPRRVTMSNWEKRELDPAQVEYACIDAYVSYKLGERV 198
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 87 ATLQLCVGHR-CLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYY------ 139
A LQLC G R CLV L +A+ +P A+ L DP + VG G D L A Y
Sbjct: 66 AVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGVWCAA 125
Query: 140 --DLHVASARELRAVAAMGNASMEAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYA 197
DL A R L V ++ A LG + KP V+MS W L QVEYA
Sbjct: 126 PVDLEDACNRRLGLVGTGRRLGLKGYAREVLGM-AMEKPRRVTMSNWEKRELDPAQVEYA 184
Query: 198 CVDAYLAFRL 207
C+DAY++++L
Sbjct: 185 CIDAYVSYKL 194
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,576,866
Number of extensions: 778287
Number of successful extensions: 2099
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2060
Number of HSP's successfully gapped: 23
Length of query: 768
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 659
Effective length of database: 11,344,475
Effective search space: 7476009025
Effective search space used: 7476009025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)