FiT-DB / Search/ Help/ Sample detail

Os04g0225100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 3'-5' exonuclease domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0425) R2 : 0.925
β1 : 4.5 (0.156) R2dD : 0.142 R2D : 0.104
β2 : 7 (0.115) R2dC : 0.71 R2C : 0.746
β3 : 1.88 (0.291) R2dE : 0.00943 R2E : 0.0468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.1 (0.973) R2dD*E : 0.0324 R2D*E : 0.0244
γ1 : 1.03 (0.0906) R2dN8 : 0.0277 R2N8 : -0.00815
σ : 0.793
deviance : 289.68
__
_____
C
peak time of C : 15.4
E
wheather : temperature
threshold : 15.16
memory length : 83
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.87
open length of G : 23.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.34 0.784 9.17 4.48 6.93 1.72 -2.2 12.2 1.02 15.4 15.1 85 4.94 23
335.46 0.853 9.25 4.59 7.02 2.2 -1.63 -- 0.814 15.4 13.3 51 5.2 23.8
289.68 0.793 9.18 4.5 7 1.88 -- 12.1 1.03 15.4 15.16 83 4.87 23.2
338.32 0.857 9.23 4.61 7.07 2.36 -- -- 0.912 15.4 13.7 50 5.21 23.8
389.66 0.919 9.15 4.79 -- 7.35 -- -2.12 1.11 -- -25.72 530 4.77 12.8
385.61 0.921 9.21 4.54 7.33 -- -0.886 -- 0.995 15.5 -- -- -- --
388.03 0.922 9.22 4.53 7.33 -- -- -- 0.99 15.5 -- -- -- --
386.51 0.916 9.17 4.55 -- 7.33 -- -- 0.979 -- 4.181 529 4.83 12.7
563.09 1.11 9.52 -- 7.12 3.05 -- -- -0.26 15.5 18.5 47520 5.38 23.3
3385.3 2.72 9.21 4.22 -- -- -- -- 0.796 -- -- -- -- --
928.14 1.43 9.33 -- 7.24 -- -- -- 0.486 15.5 -- -- -- --
934.55 1.42 9.26 -- -- 7.03 -- -- 0.626 -- 6.08 499 5.02 12.8
3854.8 2.9 9.32 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.09 temperature 15.0 90 > th dose independent rect. 5 23
2 287.39 temperature 10.0 720 > th dose dependent rect. 18 4
3 289.37 temperature 30.0 720 < th dose dependent rect. 21 4
4 289.70 temperature 20.0 270 > th dose independent rect. 1 20
5 290.53 wind 1.0 270 < th dose dependent rect. 4 1
7 291.18 wind 1.0 270 < th dose independent rect. 4 1
9 292.14 temperature 15.0 270 > th dose independent rect. 24 23
12 294.55 temperature 15.0 270 > th dose independent rect. 9 12
15 295.28 temperature 15.0 720 > th dose independent rect. 10 10
20 297.56 temperature 10.0 720 > th dose dependent rect. 18 11
25 298.71 temperature 30.0 720 < th dose dependent rect. 22 1
32 299.94 temperature 15.0 720 > th dose independent rect. 17 21
34 300.23 temperature 15.0 720 > th dose independent rect. 17 13
40 301.30 radiation 20.0 4320 < th dose independent rect. 4 2
42 301.52 temperature 15.0 720 > th dose independent rect. 18 11
44 301.98 atmosphere 1015.0 1440 < th dose independent rect. 3 5
46 302.17 temperature 15.0 720 > th dose independent rect. 9 5
71 305.27 humidity 50.0 43200 > th dose independent rect. 24 4
73 305.29 temperature 15.0 720 > th dose independent rect. 9 21
102 307.98 temperature 20.0 270 < th dose dependent rect. 20 15
103 307.99 temperature 15.0 720 > th dose independent rect. 17 5
106 308.03 wind 1.0 90 < th dose dependent rect. 4 9
115 308.51 temperature 20.0 270 < th dose dependent rect. 4 22
132 309.23 temperature 20.0 270 < th dose dependent rect. 19 22
136 309.38 temperature 20.0 270 < th dose dependent rect. 11 23
154 309.68 wind 1.0 90 < th dose dependent rect. 4 14
164 309.86 wind 1.0 90 < th dose dependent rect. 4 18
170 309.95 temperature 15.0 270 > th dose independent rect. 1 12
183 310.16 wind 3.0 10 < th dose dependent rect. 3 4
194 310.39 temperature 20.0 270 < th dose dependent no NA NA
207 310.52 humidity 90.0 90 > th dose dependent rect. 4 1
209 310.54 temperature 15.0 1440 > th dose independent rect. 23 4
213 310.65 temperature 20.0 270 < th dose dependent sin 9 NA
214 310.67 temperature 30.0 90 < th dose dependent rect. 22 13
217 310.79 wind 1.0 90 < th dose independent rect. 4 7
219 310.88 wind 1.0 90 < th dose independent rect. 4 9
224 310.99 temperature 20.0 30 > th dose dependent rect. 4 2
229 311.08 radiation 20.0 4320 < th dose independent rect. 20 10
247 311.69 temperature 25.0 10 < th dose dependent rect. 23 13
277 312.63 humidity 90.0 90 > th dose independent rect. 4 1
280 312.65 temperature 30.0 720 > th dose dependent rect. 18 1
321 313.13 temperature 20.0 90 > th dose independent rect. 4 1
328 313.33 atmosphere 1010.0 720 < th dose independent rect. 18 3
332 313.62 temperature 20.0 720 < th dose dependent rect. 7 17
369 314.41 wind 1.0 90 > th dose independent rect. 22 13
373 314.47 atmosphere 1015.0 720 < th dose independent rect. 2 19
377 314.60 temperature 25.0 720 > th dose dependent rect. 20 1
422 315.27 humidity 90.0 720 < th dose independent rect. 10 3
424 315.44 radiation 30.0 270 < th dose dependent rect. 16 13
436 315.73 wind 1.0 90 < th dose independent rect. 4 14
456 316.07 humidity 90.0 720 < th dose independent rect. 9 5
472 316.36 temperature 25.0 720 > th dose dependent rect. 20 3
476 316.52 atmosphere 1015.0 720 < th dose independent rect. 1 5
509 317.49 temperature 25.0 90 < th dose independent rect. 4 1
512 317.53 temperature 20.0 270 > th dose independent rect. 2 3
513 317.54 atmosphere 1015.0 720 < th dose independent rect. 24 14
515 317.57 humidity 50.0 14400 > th dose independent rect. 19 13
555 318.39 atmosphere 1015.0 720 < th dose independent rect. 2 10
625 319.47 temperature 20.0 270 > th dose independent rect. 1 5
697 320.44 humidity 80.0 90 > th dose dependent rect. 3 19
715 320.65 temperature 15.0 10 > th dose independent rect. 6 22
717 320.65 radiation 1.0 270 < th dose dependent rect. 1 20
729 320.76 atmosphere 1015.0 90 < th dose dependent rect. 4 1
764 321.14 humidity 50.0 270 > th dose independent rect. 16 13
786 321.42 humidity 90.0 90 > th dose independent rect. 3 3
803 321.58 radiation 1.0 270 < th dose independent rect. 1 20
815 321.66 temperature 20.0 90 > th dose independent rect. 3 12
833 321.86 atmosphere 1010.0 270 < th dose independent rect. 17 13
896 322.51 humidity 80.0 90 > th dose dependent rect. 3 4
903 322.56 radiation 10.0 270 < th dose independent rect. 16 13
911 322.69 humidity 90.0 30 > th dose independent rect. 4 8
913 322.71 precipitation 0.1 270 < th dose independent rect. 13 12
914 322.71 precipitation 0.1 270 < th dose dependent rect. 13 12
934 322.87 wind 1.0 90 > th dose independent rect. 22 21
941 322.90 temperature 20.0 270 < th dose independent rect. 20 19
968 323.10 temperature 30.0 720 < th dose dependent sin 13 NA
986 323.24 temperature 20.0 270 < th dose independent rect. 20 16