BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0225100 Os04g0225100|AK105234
(211 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12410.1 | chr3:3946267-3946959 REVERSE LENGTH=231 100 9e-22
AT3G12460.1 | chr3:3954695-3955423 REVERSE LENGTH=243 89 2e-18
AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240 85 2e-17
AT3G12430.1 | chr3:3949580-3950377 REVERSE LENGTH=239 83 1e-16
AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289 78 3e-15
AT3G12470.1 | chr3:3956123-3956785 REVERSE LENGTH=221 74 5e-14
AT3G12440.1 | chr3:3951199-3952260 REVERSE LENGTH=354 68 3e-12
AT3G12420.1 | chr3:3948014-3948882 REVERSE LENGTH=186 63 1e-10
AT5G48350.1 | chr5:19593566-19594165 FORWARD LENGTH=200 58 5e-09
AT3G11770.1 | chr3:3721490-3722092 REVERSE LENGTH=201 49 2e-06
>AT3G12410.1 | chr3:3946267-3946959 REVERSE LENGTH=231
Length = 230
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 16 YLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRXXXXXX------ 69
Y + F D F T+T + W+ +R HPLVVG+ V+W
Sbjct: 18 YSVDFFGDEFIVTVTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQWTPFSYYSDPRPNN 77
Query: 70 -------------XXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRD 116
LQLCV RCL+ Q+ + D VP+ L FLADP TFVGV
Sbjct: 78 YYADPPPIRYYSDNPADILQLCVGNRCLIIQLGYCDQVPNNLRSFLADPETTFVGVWNGQ 137
Query: 117 DAARL-RVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQ--MDKPHHVRV 173
DA +L R + LE+ +D+R D+ GR +RR+ +V E MG Q M P + +
Sbjct: 138 DAGKLARCCHQLEIGELLDIRRYVTDSWGR-SMRRSSFEEIVEECMGYQGVMLDP-EISM 195
Query: 174 SAWDKRNLSEDQFKYACADAFASREVG 200
S W +L DQ A DA+ ++G
Sbjct: 196 SDWTAYDLDLDQILQASLDAYVCHQLG 222
>AT3G12460.1 | chr3:3954695-3955423 REVERSE LENGTH=243
Length = 242
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 35/208 (16%)
Query: 20 FDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRXX-------------- 65
F E+ F T+T + W+ + + +R HPLVVG+ V+W
Sbjct: 22 FGEELF-VTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYHPASPPVSYRSD 80
Query: 66 --------------XXXXXXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVG 111
LQLCV RC++ Q+ + + VP L FLAD TFVG
Sbjct: 81 SSPDSYRSDSPPVFYSSDPPADTLQLCVGNRCIIIQLRYCERVPQVLRNFLADRDNTFVG 140
Query: 112 VGVRDDAARL-RVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVM---GVQMDK 167
+ DA +L R + LE+ +DLR +D+ GR + L +V E + GV++D+
Sbjct: 141 IWNSQDAGKLERSRHQLEIAELMDLREFVSDSSGRRSMYNYSLEKIVEENLGYPGVRLDR 200
Query: 168 PHHVRVSAWDKRNLSEDQFKYACADAFA 195
V +S W NLS DQ A D +A
Sbjct: 201 --EVSMSDWRVYNLSYDQILQASIDVYA 226
>AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240
Length = 239
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 13/185 (7%)
Query: 23 DFFD----ATLTKSGGKVESWLGETYRIHR-SCGHPLVVGLDVEWRXXXXXXXXXXXLQL 77
DFF T+T + + W+ R HPLVVGLDV+W LQL
Sbjct: 20 DFFGERLIVTVTHTTSTIRRWIHSIRFFSRLRSSHPLVVGLDVQW-TPGGSDPPPDILQL 78
Query: 78 CVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARL-RVGYGLEVPRAVDLR 136
CV RCL+ Q+ H +P+ L FL D TFVGV D +L R + LE+ R +D+R
Sbjct: 79 CVGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIWRLLDIR 138
Query: 137 ALAADTLGRPDLRRAGLRALVREVMGVQ-MDKPHHVRVSAWDKRNLSEDQFKYACADAFA 195
L + +V E +G + + K + +S W R+LS DQ A D +
Sbjct: 139 HYLPTR-----LLNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASDDVYV 193
Query: 196 SREVG 200
++G
Sbjct: 194 CCKLG 198
>AT3G12430.1 | chr3:3949580-3950377 REVERSE LENGTH=239
Length = 238
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 16 YLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEW------------- 62
YL+ F + F +T + W+ + +R HPLVVG+ V+W
Sbjct: 17 YLVDFFGEEFIVIVTPDPSVIGQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVR 76
Query: 63 ---------------RXXXXXXXXXXXLQLCVDRRCLVFQILHADYVPDALSRFLADPRF 107
R LQLCV RC++ Q+ H + VP L FLAD +
Sbjct: 77 YRSDSPPVRYRSDSPRVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDY 136
Query: 108 TFVGVGVRDDAARL-RVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVM---GV 163
TFVG+ DA +L R + LE+ +DLR +D+ GR ++R +V E + GV
Sbjct: 137 TFVGIWNSQDAGKLKRSKHELEIAVLLDLRKFVSDSSGR-TMKRCSFEKIVEENLGHSGV 195
Query: 164 QMDKPHHVRVSAWDKRNLSEDQFKYACADAFA 195
++D+ V S W +L Q A D +A
Sbjct: 196 RLDR--KVSRSDWRVYDLRYVQILQASIDVYA 225
>AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289
Length = 288
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 56 VGLDVEWRXXXXXXX---XXXXLQLCVDRR-CLVFQILHADYVPDALSRFLADPRFTFVG 111
VGLD+EWR +Q+CVD C V I H+ +P +L + D VG
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKVG 188
Query: 112 VGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHV 171
+G+ D+ +L YG+ + DL LA +G ++ GL +L ++ ++ KP+ +
Sbjct: 189 IGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGGD--KKWGLASLTETLVCKELLKPNRI 246
Query: 172 RVSAWDKRNLSEDQFKYACADAFAS 196
R+ W+ LS+ Q +YA DA+AS
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYAS 271
>AT3G12470.1 | chr3:3956123-3956785 REVERSE LENGTH=221
Length = 220
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 16 YLLSFDEDFFDATLTKSGGKVESWLGETYRIHRSCG-HPLVVGLDVEWRXXXXXXXXX-X 73
+ + F D T+T + + W+ +R+ HPLVVG+ V+WR
Sbjct: 17 HFVDFFGDDLIVTVTPTASVIRRWIRSVRSYNRNHSVHPLVVGIGVQWRPDSSDPDPPPK 76
Query: 74 XLQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARL-RVGYGLEVPRA 132
LQLCV RCL+ Q+ + +P L FLADP+ TFVGV D +L + + +E+ +
Sbjct: 77 TLQLCVGSRCLIIQLGYNYGLPKVLRTFLADPKTTFVGVWNGQDQKKLEKCRHRVEIGKL 136
Query: 133 VDLRALAADTLGRPDLRRAGLRALVREVM---GVQMDKPHHVRVSAWDKRNLSEDQFKYA 189
+D+R D+ G + +V+E + GV++D + +S W NL+ Q A
Sbjct: 137 LDIRMFVRDSRG-ARMCFCSFEQIVKERLGRVGVRLDPA--ICMSDWGVYNLNHYQVLQA 193
Query: 190 CADAFA 195
+++
Sbjct: 194 SIESYV 199
>AT3G12440.1 | chr3:3951199-3952260 REVERSE LENGTH=354
Length = 353
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 75 LQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARL-RVGYGLEVPRAV 133
LQLCV RC++ Q+ + + VP L RFL D TFVG DA +L R + LE+ +
Sbjct: 219 LQLCVGNRCIIIQLFYCNRVPHVLRRFLGDRNHTFVGFWNSQDAGKLKRSRHRLEIAELL 278
Query: 134 DLRALAADTLGRPDLRRAGLRALVREVM---GVQMDKPHHVRVSAWDKRNLSEDQFKYAC 190
DLR D+ GR L+ +V E + GV+++K + +S W +LS DQ A
Sbjct: 279 DLRNHVVDSRGR-GLKGRSFEVVVGECLGYRGVRLEK--AIGMSDWSVYDLSYDQILQAS 335
Query: 191 ADAFASREVGRR 202
D + ++G R
Sbjct: 336 IDVYVCSKLGFR 347
>AT3G12420.1 | chr3:3948014-3948882 REVERSE LENGTH=186
Length = 185
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 75 LQLCVDRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARL-RVGYGLEVPRAV 133
LQLCV +CL+ Q+ H D VP +L FL DP TFVGV DA +L R + LE+ + +
Sbjct: 113 LQLCVGNQCLIIQLCHCDQVPTSLRSFLTDPNTTFVGVWNSQDAGKLARSKHQLEIGKLL 172
Query: 134 DLRALA 139
D+R A
Sbjct: 173 DIRTEA 178
>AT5G48350.1 | chr5:19593566-19594165 FORWARD LENGTH=200
Length = 199
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 55 VVGLDVEWRXXXXXXXXXXXLQLCVDRRCLVFQI---------LHADYVPDALSRFLADP 105
++GLD E LQLC CL+ Q+ D +P L FL P
Sbjct: 41 IIGLDTERVQKGRKLNKTVLLQLCDGDNCLIVQLPDEDEDEGEGEDDNLPLPLFNFLNLP 100
Query: 106 RFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQM 165
FTFVG+G+ RL +GL V++ + + + A+ V
Sbjct: 101 EFTFVGIGINKTMMRLESEFGLTCKNVVEIGPATWNLTNMTTDVKFRISAI------VST 154
Query: 166 DKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 203
++P + + W+K L+++Q K A ++A+ + +G L
Sbjct: 155 ERPSNAVLEDWEKFVLNKNQIKLAASNAYFAFGIGNIL 192
>AT3G11770.1 | chr3:3721490-3722092 REVERSE LENGTH=201
Length = 200
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 98 LSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALV 157
L RF A TFVGV +++D A L+ +G+ + ++++ LAA G P + G R L
Sbjct: 95 LYRFFASKFVTFVGVQIQEDLALLKENHGIVIRSSLEIGKLAAKARGTPIVEFLGTRELA 154
Query: 158 REVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAF 194
+++ M + ++ S WD+ + S D+ + A + +
Sbjct: 155 HKILWYDMSRLDSIQ-SKWDEAS-SNDRLEAAAIEGW 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,451,762
Number of extensions: 166327
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 10
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)