BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0129200 Os04g0129200|Os04g0129200
(298 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289 219 2e-57
AT4G13885.1 | chr4:8028911-8030754 REVERSE LENGTH=264 89 3e-18
AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590 60 1e-09
AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240 55 6e-08
>AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289
Length = 288
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 144/200 (72%), Gaps = 3/200 (1%)
Query: 88 KARYQPVM-FNGSIVYCRTPSEVEKATRDILCKIETMK-ASGQVSLGFDLEWRPFPRRGD 145
+AR P M F G I+Y +T +EV+K ++ ++T + SG +G D+EWRP R+G
Sbjct: 85 RARNFPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRDESGIAFVGLDIEWRPSFRKGV 144
Query: 146 PPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLLEDSSSVKVGICIDNDARKMFNDYDV 205
P KVA +Q+C++ C VMHI HSG+P L+ L+EDS+ VKVGI ID D+ K+F+DY V
Sbjct: 145 LPGKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGV 204
Query: 206 HVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCRELPKPSNIRMGNWEAYVLSKQQLQY 265
++ + DLS+LAN K+G K+W LASLTE + C+EL KP+ IR+GNWE Y LSKQQLQY
Sbjct: 205 SIKDVEDLSDLANQKIG-GDKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQY 263
Query: 266 AATDAYISWHLYEVLQSLPD 285
AATDAY SWHLY+VL+ LPD
Sbjct: 264 AATDAYASWHLYKVLKDLPD 283
>AT4G13885.1 | chr4:8028911-8030754 REVERSE LENGTH=264
Length = 263
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 61/110 (55%), Gaps = 37/110 (33%)
Query: 176 LKSLLEDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTE 235
L+ L+EDS+ VKVGI ID D+ K+F+DY
Sbjct: 186 LQHLIEDSTLVKVGIGIDGDSVKLFHDYG------------------------------- 214
Query: 236 MVTCRELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLPD 285
L KP+ IR+GNWE + LSKQQLQYAATDAY SWHL++VL+ LPD
Sbjct: 215 ------LLKPNRIRLGNWEVHPLSKQQLQYAATDAYASWHLHQVLKDLPD 258
>AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590
Length = 589
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
Query: 131 LGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIH------SGVPPVLKSLLEDSS 184
+G D EW+P +G KV++MQ+ + T+ +++ +I + L +L+ S
Sbjct: 381 VGIDCEWKPNYIKGSKQNKVSIMQIGSD-TKIFILDLIKLYNDASEILDNCLSHILQSKS 439
Query: 185 SVKVGICIDNDARKM---------FNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTE 235
++K+G D +++ F YD+ L+D+ N+ N G LA LT+
Sbjct: 440 TLKLGYNFQCDIKQLALSYGDLKCFERYDM----LLDIQNVFNEPFG------GLAGLTK 489
Query: 236 MVTCRELPKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSLP 284
+ L K R +WE LS+ QL+YAA DA + H++ ++ P
Sbjct: 490 KILGVSLNKTR--RNSDWEQRPLSQNQLEYAALDAAVLIHIFRHVRDHP 536
>AT2G36110.1 | chr2:15161877-15162596 FORWARD LENGTH=240
Length = 239
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 123 MKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSG-VPPVLKSLLE 181
+++S + +G D++W P DPP ++QLC+ RC ++ + H +P VL+S LE
Sbjct: 50 LRSSHPLVVGLDVQWTPGG--SDPP--PDILQLCVG-NRCLIIQLSHCKRIPEVLRSFLE 104
Query: 182 DSSSVKVGICIDNDARKMFN-DYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVT-C 239
D + VG+ D K+ + + + L+D+ + + P R +S ++V C
Sbjct: 105 DETITFVGVWNSQDQGKLERFRHQLEIWRLLDIRH-------YLPTRLLNSSFEKIVEEC 157
Query: 240 ---RELPKPSNIRMGNWEAYVLSKQQLQYAATDAYI 272
+ + K I M NW A LS Q+ A+ D Y+
Sbjct: 158 LGYKGVRKDKEICMSNWGARSLSHDQIVQASDDVYV 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,086,895
Number of extensions: 235199
Number of successful extensions: 558
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 6
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)