BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0205800 Os04g0205800|Os04g0205800
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0205800 Reverse transcriptase, RNA-dependent DNA polym... 310 5e-85
Os08g0392400 120 6e-28
Os07g0519400 112 1e-25
Os12g0450216 105 2e-23
Os08g0175900 95 3e-20
Os11g0605080 92 1e-19
Os07g0478700 91 4e-19
Os05g0197700 91 5e-19
Os06g0478350 86 1e-17
Os01g0146700 Integrase, catalytic region domain containing ... 79 2e-15
Os05g0595700 77 6e-15
Os05g0293200 Retrotransposon gag protein family protein 76 2e-14
Os10g0334900 73 1e-13
Os08g0236200 Reverse transcriptase, RNA-dependent DNA polym... 71 5e-13
Os07g0648400 70 1e-12
Os07g0680100 68 5e-12
Os10g0534000 67 9e-12
Os05g0235100 Reverse transcriptase, RNA-dependent DNA polym... 66 1e-11
>Os04g0205800 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 184
Score = 310 bits (793), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 156/184 (84%), Positives = 156/184 (84%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP
Sbjct: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
Query: 61 CPSGINIQLATQQQQHKATVLXXXXXXXXXXXXERNWLVAACRRWAXXXXXXXXXXXXXX 120
CPSGINIQLATQQQQHKATVL ERNWLVAACRRWA
Sbjct: 61 CPSGINIQLATQQQQHKATVLQPAAARRQRPPPERNWLVAACRRWATTDDDLDEVTTIDD 120
Query: 121 XXKETVRMSDAMGTGRGTVRDGRLQREPHPAPNPAGLLLARGRRTGMEIGYDWLLLLQDE 180
KETVRMSDAMGTGRGTVRDGRLQREPHPAPNPAGLLLARGRRTGMEIGYDWLLLLQDE
Sbjct: 121 EDKETVRMSDAMGTGRGTVRDGRLQREPHPAPNPAGLLLARGRRTGMEIGYDWLLLLQDE 180
Query: 181 WADD 184
WADD
Sbjct: 181 WADD 184
>Os08g0392400
Length = 113
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 61/81 (75%)
Query: 104 RWAXXXXXXXXXXXXXXXXKETVRMSDAMGTGRGTVRDGRLQREPHPAPNPAGLLLARGR 163
RWA +ETVRMSDAMGTGRG VRDGRLQR PHP PNPAGLLLA GR
Sbjct: 31 RWATTGDDLDEVTAIDDEDEETVRMSDAMGTGRGAVRDGRLQRAPHPPPNPAGLLLAMGR 90
Query: 164 RTGMEIGYDWLLLLQDEWADD 184
RTGMEIGYDWLLLLQDEWADD
Sbjct: 91 RTGMEIGYDWLLLLQDEWADD 111
>Os07g0519400
Length = 560
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 58/66 (87%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
MVTRGK GIR+ DRLNLHAA LSP+PRTYRAALADPHW +AMEEEY+ALL+NR WDLVP
Sbjct: 393 MVTRGKSGIRRPIDRLNLHAAPLSPVPRTYRAALADPHWCTAMEEEYNALLANRMWDLVP 452
Query: 61 CPSGIN 66
P G+N
Sbjct: 453 RPPGVN 458
>Os12g0450216
Length = 695
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 56/70 (80%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
M R K G+RK R+NLHA LSPIP+TYRAALADP+WRSAMEEEY+ALL+NRTWDLVP
Sbjct: 580 MTIRAKAGVRKELTRMNLHATPLSPIPKTYRAALADPNWRSAMEEEYNALLANRTWDLVP 639
Query: 61 CPSGINIQLA 70
CP N L+
Sbjct: 640 CPVKANSPLS 649
>Os08g0175900
Length = 1158
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 50/60 (83%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
M TR K G K RLNLHAA LSP+P+TYRAALADP WR+AMEEEY+ALL+NRTWDLVP
Sbjct: 871 MTTRAKSGHHKPVHRLNLHAAPLSPVPKTYRAALADPLWRAAMEEEYNALLANRTWDLVP 930
>Os11g0605080
Length = 486
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
M T KHGI KV DRLNLH LSP+PRTYRAALADP WRSA EE+SALL NRT +LVP
Sbjct: 224 MSTHSKHGIHKVPDRLNLHVDTLSPLPRTYRAALADPPWRSAT-EEFSALLVNRTSELVP 282
Query: 61 CPSGINIQ 68
P IN+
Sbjct: 283 RPPNINVS 290
>Os07g0478700
Length = 1182
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
M T K+G +DRLNLHA+ALSPIPRTYR ALADPHWR+AMEEE++AL +N TWDL
Sbjct: 980 MATSSKYGFHLPTDRLNLHASALSPIPRTYRVALADPHWRAAMEEEFAALRANNTWDL 1037
>Os05g0197700
Length = 1023
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 49/60 (81%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDLVP 60
M TR K G K RLNLHAA LS +P+TYRAALADP WR+AMEEEY+ALL+NRTWDLVP
Sbjct: 962 MTTRAKSGHHKPVHRLNLHAAPLSLVPKTYRAALADPLWRAAMEEEYNALLANRTWDLVP 1021
>Os06g0478350
Length = 670
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWD 57
M+TRGK G+R R+NLHA LSP+PRTYRA LADP+WR AM+EEYSALL+N T D
Sbjct: 551 MITRGKAGVRVPITRMNLHATVLSPVPRTYRATLADPNWRDAMQEEYSALLANNTRD 607
>Os01g0146700 Integrase, catalytic region domain containing protein
Length = 725
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
M TRGK G+ + DRLNLHAA LSP+PR+ R AL+DP+WR+AM+ E+ ALL+N TW L
Sbjct: 533 MRTRGKAGMAQPVDRLNLHAAPLSPVPRSVREALSDPNWRAAMQAEFDALLANDTWSL 590
>Os05g0595700
Length = 122
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 1 MVTRGKHGIRKVSDRLNLHAA--ALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR K G K DRL L A+ A+SP+P YR+ALADP+WR+AM EE+ AL+ N TW L
Sbjct: 1 MVTRSKTGSLKPVDRLVLSASHSAISPLPANYRSALADPNWRAAMAEEFKALIDNGTWRL 60
Query: 59 VPCPSGIN 66
VP P G N
Sbjct: 61 VPRPPGAN 68
>Os05g0293200 Retrotransposon gag protein family protein
Length = 1621
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAALSPIPRTYRAALADPHWRSAMEEEYSALLSNRT 55
M TRGK GI R NL+A LSP+PRTYR LADPHWRSAMEEE+++L +N T
Sbjct: 964 MSTRGKDGIHLPITRYNLNATTLSPVPRTYRVVLADPHWRSAMEEEFASLQANHT 1018
>Os10g0334900
Length = 604
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 1 MVTRGKHGIRKVSDRLNLHA--AALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR + G + R N A ++SP+P YR+ALADP+W +AM +EY AL+ N TW L
Sbjct: 520 MVTRSQTGNLHPAQRFNYTAMQTSVSPVPSNYRSALADPNWHAAMADEYKALVDNNTWHL 579
Query: 59 VPCPSGINIQLAT 71
VP P G N++ T
Sbjct: 580 VPQPPGANMEYTT 592
>Os08g0236200 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 624
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 1 MVTRGKHGIRKVSDRLNLHAA--ALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR + G + R A A+SP+P YR+ALADP+WR+AM +EY AL+ N TW L
Sbjct: 510 MVTRSQTGHLRPIQRFTYTATHDAVSPVPSNYRSALADPNWRAAMADEYKALIDNNTWRL 569
Query: 59 VPCPSGINI 67
VP P G N+
Sbjct: 570 VPRPPGANV 578
>Os07g0648400
Length = 1820
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1 MVTRGKHGIRKVSDRLNLHAAAL---SPIPRTYRAALADPHWRSAMEEEYSALLSNRTWD 57
MVTR + G + DRL A SP+P YR+ALADP+WR+AM +EY AL+ N TW
Sbjct: 1558 MVTRSQTGSLRPVDRLTYTATHATAASPVPANYRSALADPNWRTAMADEYKALVDNGTWR 1617
Query: 58 LVPCPSGINIQ 68
LVP P G NI+
Sbjct: 1618 LVPRPPGANIE 1628
>Os07g0680100
Length = 716
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 1 MVTRGKHGIRKVSDRLNLHAA--ALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR + G + DRL L A+ A+SP+ YR+ALADP+WR+AM +EY AL+ N TW L
Sbjct: 651 MVTRSQTGSLRPVDRLILAASHSAISPVLTNYRSALADPNWRAAMADEYKALIDNGTWRL 710
Query: 59 VPC 61
PC
Sbjct: 711 FPC 713
>Os10g0534000
Length = 875
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 1 MVTRGKHGIRKVSDRLNLHA--AALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR + G + R N A ++SP+P YR+ALADP+ R+AM +EY AL+ N TW L
Sbjct: 805 MVTRSQTGNLRPVQRFNYTAMQTSVSPVPSNYRSALADPNCRAAMADEYKALVDNNTWRL 864
Query: 59 VPCPSGIN 66
VP P G N
Sbjct: 865 VPRPPGAN 872
>Os05g0235100 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 841
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 MVTRGKHGIRKVSDRLNLHAA--ALSPIPRTYRAALADPHWRSAMEEEYSALLSNRTWDL 58
MVTR + G + R A +SP+P YR+ALADP+WR+A EY AL+ N TW L
Sbjct: 299 MVTRSQTGHLRPIQRFTYTATHDVVSPVPSNYRSALADPNWRAATANEYKALVDNNTWRL 358
Query: 59 VPCPSGINIQLATQQQQHK 77
VP P G N+ +HK
Sbjct: 359 VPRPPGANVVTGKWIFKHK 377
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,081,603
Number of extensions: 232950
Number of successful extensions: 729
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 19
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)