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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0146700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0371) R2 : 0.137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.39 (0.174) R2dE : 0.133 R2E : 0.136
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0293 (0.0811) R2dN8 : 0.00035 R2N8 : 0.00391
σ : 0.69
deviance : 219.37
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C
peak time of C : --
E
wheather : temperature
threshold : 23.41
memory length : 732
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.99 0.686 3.05 0.106 0.192 0.97 0.844 -1.86 0.0028 9.53 24.2 779 -- --
216.77 0.686 3.09 -0.126 0.17 1.26 0.552 -- -0.0578 8.66 23.51 731 -- --
214.42 0.682 3.05 0.164 0.253 0.97 -- -1.83 0.0177 9.82 24.5 1145 -- --
216.81 0.686 3.09 -0.17 0.219 1.25 -- -- -0.0697 11.6 23.48 559 -- --
217.25 0.686 3.06 0.127 -- 1.04 -- -1.6 0.0153 -- 25.02 826 -- --
236.91 0.722 3.14 -0.502 0.322 -- 0.302 -- -0.28 10.4 -- -- -- --
237.27 0.721 3.14 -0.489 0.319 -- -- -- -0.279 10.6 -- -- -- --
218.92 0.689 3.09 -0.14 -- 1.32 -- -- -0.0531 -- 23.46 727 -- --
217.48 0.687 3.09 -- 0.213 1.33 -- -- -0.0405 11.6 23.43 571 -- --
243.53 0.729 3.14 -0.495 -- -- -- -- -0.281 -- -- -- -- --
243.57 0.73 3.12 -- 0.323 -- -- -- -0.225 10.7 -- -- -- --
219.37 0.69 3.09 -- -- 1.39 -- -- -0.0293 -- 23.41 732 -- --
249.99 0.738 3.13 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.30 temperature 25 270 < th dose dependent rect. 7 14
3 207.41 temperature 25 270 < th dose dependent sin 22 NA
9 208.23 temperature 30 720 < th dose dependent rect. 24 18
29 209.08 temperature 25 720 < th dose dependent sin 3 NA
74 210.08 temperature 10 720 > th dose dependent rect. 23 16
84 210.17 temperature 10 720 > th dose dependent rect. 21 18
87 210.20 temperature 10 720 > th dose dependent rect. 19 20
97 210.35 temperature 30 90 < th dose dependent rect. 15 21
98 210.36 temperature 25 720 < th dose dependent rect. 6 9
116 210.56 temperature 10 720 > th dose dependent rect. 2 13
189 211.26 temperature 10 720 > th dose dependent sin 5 NA
195 211.28 temperature 30 270 < th dose dependent rect. 5 22
234 211.56 temperature 15 90 > th dose dependent rect. 23 23
344 212.31 temperature 10 270 > th dose dependent sin 23 NA
406 212.66 temperature 15 90 > th dose dependent rect. 11 23
422 212.75 humidity 90 14400 > th dose dependent rect. 20 9
431 212.79 temperature 20 270 < th dose dependent rect. 12 6
466 212.94 temperature 25 1440 < th dose dependent rect. 1 1
487 213.00 temperature 15 90 > th dose dependent rect. 3 23
488 213.01 temperature 10 1440 > th dose dependent rect. 1 1
524 213.11 temperature 20 270 < th dose independent rect. 12 6
559 213.24 temperature 25 720 < th dose dependent no NA NA
599 213.34 temperature 10 1440 > th dose dependent rect. 24 8
604 213.35 temperature 10 1440 > th dose dependent rect. 1 6
606 213.35 temperature 10 1440 > th dose dependent rect. 24 10
614 213.36 temperature 25 1440 < th dose dependent rect. 23 5
620 213.37 temperature 30 1440 < th dose dependent rect. 1 5
669 213.44 temperature 30 1440 < th dose dependent rect. 5 1
680 213.46 wind 9 43200 < th dose independent rect. 19 2
741 213.55 temperature 10 1440 > th dose dependent rect. 5 1
761 213.58 wind 5 43200 > th dose dependent rect. 19 2
778 213.60 humidity 90 14400 > th dose dependent rect. 3 4
779 213.60 humidity 90 14400 > th dose dependent rect. 1 7
783 213.60 temperature 10 270 > th dose dependent rect. 9 23
800 213.63 temperature 10 270 > th dose dependent no NA NA
841 213.67 temperature 30 1440 < th dose dependent rect. 3 1
928 213.79 temperature 20 720 < th dose independent sin 2 NA
961 213.83 temperature 20 720 < th dose independent rect. 4 13
975 213.84 temperature 30 90 < th dose dependent rect. 9 18
987 213.86 humidity 90 14400 > th dose dependent rect. 23 4