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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0293200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0237) R2 : 0.00172
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0442 (0.0498) R2dN8 : 0.00223 R2N8 : 0.00172
σ : 0.446
deviance : 91.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.95 0.436 3.3 0.522 0.149 1.11 0.00955 -8.27 -0.0195 5.02 1000 130 -- --
87.17 0.438 3.4 -0.0122 0.144 -0.325 -0.0118 -- -0.0205 5.11 1000 130 -- --
85.95 0.432 3.3 0.523 0.149 1.12 -- -8.3 -0.0197 5.01 1000 133 -- --
86.83 0.434 3.4 -0.0167 0.142 -0.368 -- -- -0.0201 5.02 999.8 113 -- --
87.1 0.435 3.31 0.493 -- 1.07 -- -8.05 -0.0164 -- 999.9 148 -- --
90.07 0.445 3.41 0.0461 0.138 -- -0.0221 -- -0.0421 5.25 -- -- -- --
90.07 0.444 3.41 0.0461 0.138 -- -- -- -0.042 5.3 -- -- -- --
87.89 0.437 3.4 -0.00947 -- -0.36 -- -- -0.016 -- 999.8 114 -- --
86.83 0.434 3.4 -- 0.143 -0.361 -- -- -0.018 5.2 999.8 114 -- --
91.07 0.446 3.41 0.0509 -- -- -- -- -0.0386 -- -- -- -- --
90.13 0.444 3.41 -- 0.139 -- -- -- -0.0471 5.29 -- -- -- --
87.89 0.437 3.4 -- -- -0.358 -- -- -0.0151 -- 999.8 114 -- --
91.14 0.446 3.41 -- -- -- -- -- -0.0442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.77 temperature 15.0 30 > th dose independent rect. 3 23
3 77.03 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 77.09 wind 3.0 10 < th dose dependent rect. 2 1
7 77.15 wind 3.0 30 < th dose independent rect. 2 1
17 77.19 temperature 10.0 30 > th dose independent rect. 2 1
19 77.19 temperature 30.0 30 < th dose independent rect. 2 1
20 77.19 humidity 50.0 30 > th dose independent rect. 2 1
23 77.19 atmosphere 995.0 30 > th dose independent rect. 2 1
24 77.19 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 77.19 radiation 1.0 30 < th dose independent rect. 2 1
31 77.19 precipitation 0.1 30 < th dose independent rect. 2 1
33 77.19 temperature 10.0 30 > th dose dependent rect. 2 1
34 77.19 radiation 1.0 30 < th dose dependent rect. 2 1
39 77.19 precipitation 0.1 30 < th dose dependent rect. 2 1
42 77.20 humidity 50.0 30 > th dose dependent rect. 2 1
47 77.23 humidity 90.0 30 > th dose independent rect. 2 1
51 77.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
56 77.27 temperature 30.0 30 < th dose dependent rect. 2 1
59 77.33 atmosphere 995.0 30 > th dose dependent rect. 2 1
64 77.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
94 77.52 wind 1.0 30 > th dose independent rect. 2 1
101 77.68 wind 9.0 30 < th dose independent rect. 3 23
106 78.16 atmosphere 1000.0 30 > th dose independent rect. 3 23
113 79.43 precipitation 0.1 30 < th dose independent rect. 3 23
114 79.43 precipitation 0.1 30 < th dose dependent rect. 3 23
119 80.16 temperature 10.0 30 > th dose dependent rect. 3 23
125 80.58 radiation 1.0 43200 < th dose dependent rect. 3 1
137 81.50 wind 1.0 30 < th dose independent rect. 23 4
143 81.53 wind 9.0 1440 < th dose independent rect. 3 1
144 81.53 temperature 10.0 1440 > th dose independent rect. 3 1
147 81.53 temperature 30.0 1440 < th dose independent rect. 3 1
151 81.53 humidity 50.0 1440 > th dose independent rect. 3 1
160 81.53 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 81.53 radiation 1.0 1440 < th dose independent rect. 3 1
181 81.53 temperature 10.0 1440 > th dose independent rect. 4 23
210 82.36 wind 1.0 30 < th dose independent rect. 14 13
211 82.36 humidity 50.0 30 > th dose independent rect. 3 23
217 82.48 wind 1.0 30 < th dose independent rect. 11 16
220 82.65 wind 9.0 720 > th dose dependent rect. 13 5
230 82.82 wind 9.0 720 < th dose independent sin 14 NA
232 82.83 wind 9.0 720 > th dose dependent rect. 13 10
248 82.87 wind 1.0 30 < th dose independent rect. 8 19
272 82.97 wind 9.0 720 > th dose dependent rect. 16 2
277 83.04 wind 9.0 720 > th dose dependent sin 14 NA
300 83.12 humidity 90.0 90 < th dose independent rect. 2 1
306 83.14 wind 7.0 720 < th dose independent rect. 13 16
307 83.15 atmosphere 1000.0 90 < th dose independent rect. 16 10
313 83.17 wind 9.0 720 > th dose dependent rect. 16 10
321 83.18 wind 9.0 720 > th dose dependent rect. 16 6
361 83.26 wind 9.0 720 > th dose independent rect. 17 1
377 83.37 wind 9.0 720 > th dose independent rect. 13 5
393 83.47 atmosphere 1000.0 270 < th dose independent rect. 22 1
394 83.47 atmosphere 1000.0 90 < th dose independent rect. 23 3
396 83.47 atmosphere 1000.0 10 < th dose independent rect. 23 4
410 83.48 atmosphere 1000.0 10 < th dose independent rect. 17 10
449 83.56 wind 3.0 30 < th dose dependent rect. 22 5
454 83.58 wind 9.0 720 > th dose independent rect. 17 9
472 83.60 wind 9.0 720 > th dose independent rect. 17 6
476 83.60 atmosphere 1000.0 90 < th dose dependent rect. 16 9
498 83.73 atmosphere 1015.0 30 < th dose independent rect. 3 23
512 83.77 wind 9.0 720 > th dose independent sin 13 NA
517 83.77 wind 9.0 720 > th dose independent rect. 13 13
525 83.78 wind 9.0 720 > th dose independent rect. 13 9
560 83.88 atmosphere 1000.0 90 < th dose independent rect. 16 17
564 83.89 atmosphere 1000.0 270 < th dose dependent rect. 17 6
565 83.90 atmosphere 1000.0 90 < th dose independent sin 11 NA
571 83.91 atmosphere 1000.0 270 < th dose independent sin 13 NA
578 83.92 atmosphere 1000.0 270 < th dose dependent rect. 20 3
615 83.96 atmosphere 1000.0 270 < th dose dependent rect. 21 1
625 83.98 atmosphere 1000.0 90 < th dose dependent rect. 23 2
629 84.00 wind 1.0 270 < th dose independent rect. 19 1
634 84.00 wind 1.0 270 < th dose dependent rect. 19 1
647 84.01 atmosphere 1000.0 10 < th dose dependent rect. 17 9
655 84.03 atmosphere 1000.0 10 < th dose independent sin 10 NA
669 84.07 atmosphere 1000.0 270 < th dose independent rect. 18 2
719 84.13 atmosphere 1000.0 10 < th dose dependent rect. 23 3
752 84.17 wind 5.0 14400 < th dose dependent rect. 10 2
758 84.17 humidity 80.0 14400 < th dose dependent rect. 1 8
773 84.18 temperature 15.0 720 > th dose independent rect. 15 8
815 84.21 atmosphere 1000.0 10 < th dose independent rect. 17 16
860 84.25 atmosphere 1000.0 90 < th dose independent rect. 22 11
913 84.29 atmosphere 1000.0 10 < th dose independent rect. 23 1
928 84.29 atmosphere 1000.0 30 < th dose independent rect. 23 9
933 84.29 atmosphere 1000.0 270 < th dose independent rect. 19 11
942 84.30 atmosphere 1015.0 720 < th dose independent rect. 3 8
962 84.33 atmosphere 1000.0 30 > th dose independent sin 9 NA