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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0197700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0186) R2 : 2.72e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00437 (0.0392) R2dN8 : 3.51e-05 R2N8 : 2.72e-05
σ : 0.351
deviance : 56.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.86 0.338 3.16 1.3 0.154 -0.87 -0.287 7.03 0.0574 5.69 29.32 1594 -- --
53.95 0.342 3.29 0.17 0.163 -0.0824 -0.251 -- 0.0188 5.35 26.65 1652 -- --
51.93 0.336 3.17 1.25 0.141 -0.862 -- 6.95 0.0884 5.54 29 1751 -- --
53.84 0.342 3.29 0.18 0.171 -0.0964 -- -- 0.012 5.19 33.29 1059 -- --
52.91 0.339 3.16 1.3 -- -0.913 -- 7.31 0.104 -- 28.94 1791 -- --
54.14 0.345 3.29 0.151 0.172 -- -0.281 -- 0.0164 5.82 -- -- -- --
54.33 0.345 3.29 0.149 0.17 -- -- -- 0.0175 5.76 -- -- -- --
55.41 0.347 3.3 0.175 -- -0.0956 -- -- 0.00687 -- 33.4 1058 -- --
54.57 0.344 3.3 -- 0.176 -0.0774 -- -- -0.0142 5.52 33.34 1060 -- --
55.84 0.349 3.29 0.154 -- -- -- -- 0.0215 -- -- -- -- --
54.92 0.347 3.3 -- 0.173 -- -- -- 0.000873 5.72 -- -- -- --
56.2 0.349 3.3 -- -- -0.0767 -- -- -0.00856 -- 33.7 1019 -- --
56.46 0.351 3.3 -- -- -- -- -- 0.00437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.77 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 48.08 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 48.18 atmosphere 995.0 720 > th dose independent rect. 23 16
5 48.28 atmosphere 1005.0 10 > th dose dependent rect. 2 2
7 48.45 radiation 1.0 43200 < th dose dependent rect. 3 1
9 48.61 atmosphere 1000.0 720 > th dose independent rect. 3 8
11 48.70 temperature 10.0 720 > th dose independent rect. 15 8
12 48.70 temperature 10.0 720 > th dose independent rect. 23 16
13 48.77 humidity 50.0 720 > th dose independent rect. 3 8
14 48.81 temperature 25.0 90 > th dose independent rect. 1 1
15 48.82 temperature 10.0 720 > th dose independent rect. 3 8
17 48.82 temperature 10.0 720 > th dose independent rect. 11 16
20 48.97 temperature 25.0 90 > th dose dependent rect. 1 2
21 48.99 precipitation 0.1 720 < th dose independent rect. 15 8
22 48.99 precipitation 0.1 720 < th dose dependent rect. 15 8
26 49.06 radiation 1.0 4320 < th dose dependent rect. 3 1
32 49.11 wind 3.0 30 < th dose independent rect. 2 1
36 49.12 precipitation 0.1 30 < th dose independent rect. 3 23
37 49.12 wind 3.0 30 < th dose dependent rect. 2 1
43 49.12 atmosphere 1010.0 30 < th dose dependent rect. 2 1
45 49.12 precipitation 0.1 30 < th dose dependent rect. 3 23
46 49.13 wind 9.0 1440 < th dose independent rect. 3 1
48 49.13 temperature 10.0 1440 > th dose independent rect. 3 1
51 49.13 temperature 30.0 1440 < th dose independent rect. 3 1
55 49.13 humidity 50.0 1440 > th dose independent rect. 3 1
64 49.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
65 49.13 radiation 1.0 1440 < th dose independent rect. 3 1
85 49.13 temperature 10.0 1440 > th dose independent rect. 4 23
104 49.14 temperature 10.0 30 > th dose independent rect. 2 1
106 49.14 temperature 30.0 30 < th dose independent rect. 2 1
107 49.14 humidity 50.0 30 > th dose independent rect. 2 1
110 49.14 humidity 90.0 30 > th dose independent rect. 2 1
111 49.14 atmosphere 995.0 30 > th dose independent rect. 2 1
112 49.14 atmosphere 1005.0 30 > th dose independent rect. 2 1
113 49.14 atmosphere 1010.0 30 < th dose independent rect. 2 1
115 49.14 radiation 1.0 30 < th dose independent rect. 2 1
120 49.14 precipitation 0.1 30 < th dose independent rect. 2 1
121 49.14 temperature 10.0 30 > th dose independent rect. 3 23
122 49.14 humidity 50.0 30 > th dose dependent rect. 2 1
128 49.14 radiation 1.0 30 < th dose dependent rect. 2 1
133 49.14 precipitation 0.1 30 < th dose dependent rect. 2 1
140 49.20 wind 9.0 720 < th dose independent rect. 3 8
141 49.20 temperature 30.0 30 < th dose dependent rect. 2 1
142 49.21 wind 1.0 30 > th dose independent rect. 2 1
149 49.26 atmosphere 995.0 720 > th dose independent rect. 11 16
155 49.29 atmosphere 995.0 720 > th dose independent rect. 15 8
197 49.59 wind 9.0 30 < th dose independent rect. 3 23
201 49.65 precipitation 0.1 720 < th dose independent rect. 11 16
203 49.65 precipitation 0.1 720 < th dose dependent rect. 11 16
207 49.79 humidity 50.0 30 > th dose independent rect. 3 23
209 49.88 radiation 10.0 30 > th dose independent rect. 7 1
211 49.90 wind 9.0 720 < th dose independent rect. 15 8
216 49.95 humidity 80.0 10 < th dose independent rect. 6 2
224 50.11 radiation 40.0 720 < th dose independent rect. 15 8
229 50.19 humidity 90.0 90 < th dose independent rect. 2 1
231 50.23 precipitation 0.1 720 < th dose independent rect. 3 8
232 50.23 precipitation 0.1 720 < th dose dependent rect. 3 8
233 50.27 humidity 80.0 10 < th dose independent rect. 24 8
239 50.34 precipitation 0.1 720 < th dose independent rect. 23 16
240 50.34 humidity 80.0 14400 < th dose dependent rect. 24 9
241 50.34 precipitation 0.1 720 < th dose dependent rect. 23 16
249 50.43 atmosphere 1015.0 720 < th dose independent rect. 3 8
293 50.54 wind 7.0 14400 < th dose dependent rect. 11 1
300 50.66 wind 1.0 14400 > th dose dependent rect. 11 1
307 50.75 wind 5.0 14400 < th dose independent rect. 9 8
308 50.76 wind 5.0 14400 > th dose independent rect. 9 8
310 50.78 atmosphere 1000.0 30 > th dose independent rect. 23 21
313 50.80 wind 5.0 14400 < th dose independent rect. 11 2
329 50.84 radiation 10.0 10 > th dose independent rect. 16 16
332 50.86 atmosphere 995.0 720 > th dose independent rect. 7 8
338 50.89 atmosphere 1000.0 30 > th dose independent rect. 23 23
339 50.90 temperature 25.0 30 > th dose independent rect. 20 3
345 50.93 wind 3.0 14400 > th dose dependent rect. 9 6
354 50.96 atmosphere 1005.0 30 > th dose dependent rect. 20 3
360 51.00 wind 5.0 14400 > th dose independent rect. 11 2
393 51.10 temperature 30.0 720 < th dose independent rect. 15 8
400 51.13 humidity 80.0 14400 < th dose independent rect. 7 1
404 51.14 wind 9.0 720 < th dose independent rect. 19 8
415 51.16 temperature 25.0 720 > th dose dependent rect. 3 6
419 51.17 humidity 80.0 14400 < th dose dependent rect. 7 1
429 51.19 radiation 10.0 30 < th dose independent rect. 3 23
435 51.21 wind 9.0 720 < th dose independent rect. 15 16
439 51.21 radiation 1.0 720 < th dose dependent rect. 18 9
454 51.25 atmosphere 1000.0 720 > th dose independent rect. 21 14
460 51.26 atmosphere 1000.0 90 > th dose independent rect. 23 12
470 51.27 radiation 10.0 10 < th dose dependent rect. 3 23
477 51.30 atmosphere 1005.0 30 > th dose independent rect. 20 3
482 51.30 atmosphere 1000.0 30 > th dose independent rect. 8 23
485 51.31 wind 9.0 720 < th dose independent rect. 11 16
498 51.33 temperature 25.0 30 > th dose dependent rect. 20 3
508 51.37 wind 5.0 14400 < th dose independent sin 0 NA
510 51.37 temperature 10.0 720 > th dose independent rect. 7 8
511 51.37 atmosphere 1015.0 720 < th dose independent rect. 7 8
513 51.37 temperature 10.0 720 > th dose independent rect. 15 16
522 51.39 temperature 10.0 720 > th dose independent rect. 19 8
523 51.39 temperature 30.0 720 < th dose independent rect. 19 8
524 51.39 humidity 50.0 720 > th dose independent rect. 19 8
525 51.39 atmosphere 995.0 720 > th dose independent rect. 19 8
526 51.39 radiation 1.0 720 < th dose independent rect. 19 8
531 51.39 temperature 10.0 720 > th dose independent rect. 3 16
542 51.40 precipitation 0.1 720 < th dose independent rect. 19 8
548 51.40 precipitation 0.1 720 < th dose dependent rect. 19 8
550 51.41 atmosphere 1000.0 30 > th dose independent rect. 23 8
553 51.41 atmosphere 995.0 720 > th dose independent rect. 3 16
562 51.43 wind 5.0 14400 > th dose independent sin 0 NA
564 51.43 temperature 25.0 720 > th dose independent rect. 3 6
578 51.44 temperature 30.0 30 < th dose independent rect. 3 23
590 51.46 precipitation 0.1 4320 < th dose independent rect. 23 1
595 51.46 humidity 50.0 720 > th dose independent rect. 23 16
596 51.46 wind 5.0 14400 < th dose independent rect. 24 17
598 51.46 precipitation 0.1 4320 < th dose dependent rect. 23 1
599 51.47 wind 3.0 14400 > th dose independent rect. 19 2
602 51.47 wind 5.0 14400 > th dose independent rect. 24 17
603 51.47 temperature 30.0 1440 > th dose independent rect. 15 20
608 51.48 wind 3.0 14400 < th dose independent rect. 19 2
610 51.48 atmosphere 1000.0 720 > th dose independent rect. 23 10
614 51.48 temperature 30.0 720 < th dose independent rect. 15 16
615 51.48 wind 5.0 14400 < th dose independent rect. 9 18
617 51.48 temperature 30.0 1440 < th dose independent rect. 15 20
649 51.51 temperature 30.0 1440 > th dose dependent rect. 15 1
653 51.52 precipitation 0.1 720 < th dose independent rect. 7 8
660 51.52 precipitation 0.1 720 < th dose dependent rect. 7 8
677 51.54 wind 5.0 14400 > th dose independent rect. 9 18
690 51.55 precipitation 0.1 720 < th dose independent rect. 15 16
698 51.55 precipitation 0.1 720 < th dose dependent rect. 15 16
731 51.58 wind 9.0 720 < th dose independent rect. 23 16
745 51.59 wind 5.0 14400 > th dose independent rect. 15 2
756 51.60 humidity 70.0 720 > th dose independent rect. 19 8
763 51.60 temperature 25.0 720 > th dose dependent rect. 8 1
765 51.61 temperature 30.0 1440 > th dose independent rect. 15 4
778 51.61 temperature 30.0 1440 < th dose independent rect. 15 14
783 51.61 atmosphere 995.0 720 > th dose independent rect. 15 16
788 51.61 wind 5.0 14400 < th dose dependent rect. 19 1
797 51.62 atmosphere 1000.0 10 > th dose independent rect. 21 23
801 51.62 radiation 40.0 10 < th dose dependent rect. 23 12
804 51.63 temperature 30.0 1440 < th dose independent rect. 15 4
817 51.64 humidity 90.0 4320 < th dose independent rect. 3 6
833 51.65 humidity 70.0 14400 > th dose independent rect. 8 1
843 51.65 humidity 90.0 90 < th dose dependent rect. 2 1
847 51.65 atmosphere 995.0 30 > th dose dependent rect. 23 21
861 51.66 humidity 80.0 4320 > th dose dependent rect. 3 6
897 51.68 humidity 80.0 4320 > th dose dependent rect. 3 10
904 51.69 humidity 90.0 4320 < th dose independent rect. 3 9
914 51.69 atmosphere 995.0 90 > th dose dependent rect. 3 16
923 51.70 humidity 80.0 14400 < th dose independent rect. 22 15
927 51.70 humidity 80.0 4320 > th dose dependent rect. 23 1
928 51.70 radiation 10.0 43200 < th dose dependent rect. 23 1
935 51.71 humidity 90.0 4320 > th dose independent rect. 3 1
942 51.71 radiation 40.0 720 < th dose independent rect. 15 16
945 51.71 humidity 90.0 10 < th dose dependent rect. 7 1
950 51.72 humidity 90.0 720 < th dose independent rect. 1 3
952 51.72 radiation 10.0 10 < th dose independent rect. 23 9
976 51.73 precipitation 0.1 720 < th dose independent rect. 17 8
983 51.73 atmosphere 1000.0 90 > th dose independent rect. 3 16
989 51.73 precipitation 0.1 720 < th dose dependent rect. 17 8
999 51.74 wind 3.0 14400 > th dose dependent sin 23 NA