BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0197700 Os05g0197700|Os05g0197700
         (1023 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               63   1e-09

>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 695 RSLNNIVRSMLFQAKLPGSFWVEALHTATHLINRHPTKTLDRHTPHFALYGTHPSYSHLR 754
           R++   VRSML +  LP +F  +A +TA H+IN++P+  ++ H P    + + P+YS+LR
Sbjct: 3   RTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLR 62

Query: 755 VFGCKCYPNLSATTPHKLAPRS 776
            FGC  Y +       KL PR+
Sbjct: 63  RFGCVAYIHCDEG---KLKPRA 81



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,684,313
Number of extensions: 688217
Number of successful extensions: 3782
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3788
Number of HSP's successfully gapped: 1
Length of query: 1023
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 914
Effective length of database: 8,118,225
Effective search space: 7420057650
Effective search space used: 7420057650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)