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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0205800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.05) R2 : 0.14
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.55 (0.242) R2dE : 0.0799 R2E : 0.0901
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.476 (0.107) R2dN8 : 0.0502 R2N8 : 0.0604
σ : 0.935
deviance : 402.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.49
memory length : 1006
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
385.52 0.923 3.67 0.732 0.0885 1.13 -0.904 -2.76 -0.346 23.8 18.5 841 -- --
394.59 0.925 3.71 0.608 0.173 1.91 -0.379 -- -0.394 0.0602 18.6 1005 -- --
388.37 0.918 3.68 0.72 0.133 1.27 -- -2.11 -0.36 2.14 18.5 858 -- --
394.01 0.924 3.72 0.577 0.183 1.87 -- -- -0.38 2.9 18.6 1005 -- --
389.22 0.919 3.68 0.714 -- 1.17 -- -2.31 -0.358 -- 18.57 841 -- --
438.32 0.981 3.77 -0.00818 0.108 -- 0.141 -- -0.609 8.16 -- -- -- --
438.37 0.98 3.77 -0.0046 0.11 -- -- -- -0.609 7.75 -- -- -- --
395.89 0.927 3.72 0.564 -- 1.81 -- -- -0.383 -- 18.6 1008 -- --
401.33 0.933 3.74 -- 0.171 1.61 -- -- -0.475 3.12 18.5 1006 -- --
439.02 0.979 3.77 -0.00322 -- -- -- -- -0.608 -- -- -- -- --
438.37 0.979 3.77 -- 0.11 -- -- -- -0.609 7.75 -- -- -- --
402.94 0.935 3.74 -- -- 1.55 -- -- -0.476 -- 18.49 1006 -- --
439.02 0.978 3.77 -- -- -- -- -- -0.607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.79 radiation 1 4320 > th dose independent rect. 6 5
2 376.88 radiation 1 4320 < th dose independent rect. 6 5
5 377.47 radiation 1 4320 < th dose dependent rect. 6 4
9 377.74 radiation 1 4320 < th dose dependent rect. 7 2
25 380.08 radiation 1 4320 < th dose dependent rect. 6 9
38 383.18 wind 5 43200 < th dose independent rect. 23 2
41 383.68 wind 5 43200 > th dose independent rect. 23 2
43 384.51 wind 9 43200 > th dose dependent rect. 16 15
44 384.58 wind 5 43200 > th dose dependent rect. 23 2
46 384.81 humidity 80 43200 > th dose independent rect. 18 2
56 385.80 humidity 80 43200 < th dose independent rect. 17 3
57 385.87 wind 9 43200 > th dose independent rect. 16 16
64 386.59 wind 9 43200 < th dose independent rect. 16 17
69 386.83 wind 9 43200 < th dose independent rect. 17 15
70 386.85 wind 9 43200 < th dose independent rect. 20 8
71 386.86 temperature 25 4320 < th dose dependent rect. 13 1
79 387.06 wind 9 43200 > th dose independent rect. 20 8
84 387.19 humidity 50 43200 < th dose independent rect. 17 1
100 387.54 humidity 50 43200 > th dose independent rect. 17 1
101 387.55 humidity 50 43200 < th dose independent rect. 16 16
105 387.63 wind 9 43200 > th dose independent rect. 20 4
106 387.64 wind 9 43200 < th dose independent rect. 20 4
110 387.76 wind 9 43200 < th dose independent rect. 20 6
114 387.81 wind 7 43200 > th dose dependent rect. 20 12
116 387.83 wind 9 43200 > th dose independent rect. 20 6
120 387.90 humidity 50 43200 > th dose independent rect. 16 15
124 387.92 wind 7 43200 > th dose dependent rect. 20 8
126 387.98 wind 9 43200 > th dose dependent rect. 17 7
132 388.07 humidity 50 14400 < th dose dependent rect. 12 1
139 388.20 humidity 60 43200 < th dose dependent rect. 17 1
159 388.46 humidity 80 43200 < th dose independent rect. 18 1
160 388.48 radiation 40 43200 > th dose independent rect. 15 17
166 388.58 humidity 50 43200 < th dose independent rect. 16 6
173 388.60 wind 7 43200 > th dose independent rect. 20 13
181 388.67 humidity 50 14400 > th dose dependent rect. 22 9
186 388.71 humidity 50 43200 > th dose independent rect. 16 7
200 388.82 humidity 50 14400 > th dose dependent rect. 1 6
209 388.87 humidity 70 14400 > th dose dependent rect. 5 1
231 389.00 humidity 60 43200 < th dose dependent rect. 16 16
287 389.34 wind 9 43200 < th dose independent sin 11 NA
320 389.50 temperature 20 720 < th dose dependent rect. 17 18
329 389.53 temperature 20 720 < th dose dependent rect. 18 14
335 389.56 wind 9 43200 > th dose independent sin 11 NA
338 389.59 humidity 60 43200 < th dose dependent rect. 17 7
350 389.65 wind 9 43200 < th dose independent rect. 17 11
396 389.83 wind 7 43200 > th dose independent rect. 8 1
412 389.87 temperature 20 4320 < th dose dependent rect. 1 15
419 389.90 temperature 20 720 < th dose dependent sin 11 NA
440 390.00 radiation 30 4320 < th dose independent rect. 4 4
452 390.05 radiation 30 4320 < th dose independent rect. 18 14
503 390.21 wind 7 43200 < th dose independent rect. 8 1
508 390.22 wind 7 43200 > th dose dependent sin 11 NA
621 390.61 temperature 20 4320 < th dose dependent sin 3 NA
644 390.68 temperature 20 4320 < th dose dependent rect. 6 1
683 390.83 wind 9 43200 > th dose dependent sin 13 NA
699 390.89 atmosphere 1015 4320 < th dose independent rect. 13 5
717 390.96 temperature 20 720 < th dose dependent rect. 24 23
733 391.02 atmosphere 1015 4320 > th dose independent rect. 12 6
746 391.06 temperature 20 1440 < th dose dependent rect. 22 1
770 391.14 wind 9 43200 > th dose independent rect. 17 7
784 391.17 temperature 20 1440 < th dose independent rect. 4 18
798 391.20 temperature 25 1440 < th dose dependent rect. 8 1
820 391.26 atmosphere 1015 4320 > th dose dependent rect. 12 6
825 391.27 wind 5 43200 > th dose dependent rect. 7 2
830 391.29 temperature 20 720 < th dose dependent rect. 9 23
834 391.31 temperature 20 720 < th dose dependent no NA NA
840 391.33 wind 9 43200 < th dose independent rect. 17 7
872 391.43 temperature 20 1440 < th dose independent rect. 5 8
935 391.62 wind 3 43200 < th dose dependent rect. 1 1
938 391.63 radiation 40 43200 > th dose independent rect. 15 1
969 391.66 temperature 25 1440 < th dose dependent rect. 6 10
973 391.67 temperature 20 1440 > th dose independent rect. 4 18
974 391.67 wind 3 43200 < th dose dependent rect. 23 3
981 391.69 atmosphere 1015 4320 > th dose dependent rect. 12 3