BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0830300 Os03g0830300|Os03g0830300
(146 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0830300 Similar to Fw2.2 175 9e-45
Os03g0830200 Protein of unknown function Cys-rich family pr... 130 4e-31
Os03g0830500 Similar to PGPS/D12 115 1e-26
Os03g0829800 Similar to Placenta-specific gene 8 protein (C... 93 7e-20
Os02g0579800 Similar to Fw2.2 87 4e-18
Os04g0461600 Similar to Fw2.2 67 3e-12
Os02g0763000 Protein of unknown function Cys-rich family pr... 65 2e-11
>Os03g0830300 Similar to Fw2.2
Length = 146
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 95/146 (65%)
Query: 1 MAKPSAGAVTGVPIGSAAWSXXXXXXXXXXXXXXXXXXXXXXXFGRVAEIVDRGSTSFGT 60
MAKPSAGAVTGVPIGSAAWS FGRVAEIVDRGSTSFGT
Sbjct: 1 MAKPSAGAVTGVPIGSAAWSTGLCDCFDDCGLCCTTCWCPCITFGRVAEIVDRGSTSFGT 60
Query: 61 GGALYALLGCTCTYRGKMRAQHGLGDAAXXXXXXXXXXXXXXXXQEYRELVARGYDPKLG 120
GGALYALLGCTCTYRGKMRAQHGLGDAA QEYRELVARGYDPKLG
Sbjct: 61 GGALYALLGCTCTYRGKMRAQHGLGDAACGDCCVHCCCESCALCQEYRELVARGYDPKLG 120
Query: 121 WHLNVERGXXXXXXXXXXXXVQHMGR 146
WHLNVERG VQHMGR
Sbjct: 121 WHLNVERGAAAAAAAAAAPAVQHMGR 146
>Os03g0830200 Protein of unknown function Cys-rich family protein
Length = 150
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 1 MAKPSAGAVTGVPIGSAAWSXXXXXXXXXXXXXXXXXXXXXXXFGRVAEIVDRGSTSFGT 60
MAKPSA VTGVP+GSAAWS FGRVAE+VDRGSTS GT
Sbjct: 1 MAKPSAAPVTGVPVGSAAWSTGLCDCFDDCGLCCLTCWCPCITFGRVAEMVDRGSTSCGT 60
Query: 61 GGALYALL----GC----TCTYRGKMRAQHGLGDAAXXXXXXXXXXXXXXXXQEYRELVA 112
GGALY LL GC +CTYRGKMR Q+GL +A QEYRELVA
Sbjct: 61 GGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCCVHFCCEPCALCQEYRELVA 120
Query: 113 RGYDPKLGWHLNVERGXXXXXXXXXXXXVQHMGR 146
RGYDPKLGWHLN +R VQ+MGR
Sbjct: 121 RGYDPKLGWHLNADR----AAAAGAAPAVQYMGR 150
>Os03g0830500 Similar to PGPS/D12
Length = 141
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 1 MAKPSAGAVTGVPIGSAAWSXXXXXXXXXXXXXXXXXXXXXXXFGRVAEIVDRGSTSFGT 60
MAKPSA AAWS FGRVAE+VDRGSTS GT
Sbjct: 1 MAKPSA----------AAWSTGLLDCFDDCGLCCMTCWCPCITFGRVAEMVDRGSTSCGT 50
Query: 61 GGALYALL----GC----TCTYRGKMRAQHGLGD-AAXXXXXXXXXXXXXXXXQEYRELV 111
GALYALL GC +C YRGKMRAQ+GLGD AA QEYRELV
Sbjct: 51 SGALYALLATVTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELV 110
Query: 112 ARGYDPKLGWHLNVERGXXXXXXXXXXXXVQHMGR 146
ARGYDPKLGW LNV+RG VQHMGR
Sbjct: 111 ARGYDPKLGWDLNVQRG----AAAAAAPAVQHMGR 141
>Os03g0829800 Similar to Placenta-specific gene 8 protein (C15 protein)
Length = 143
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 3 KPSAGAVTGVPIGSAAWSXXXXXXXXXXXXXXXXXXXXXXXFGRVAEIVDRGSTSFGTGG 62
KP+AG GVP+GSA WS FGRVAEIVDRGSTS G G
Sbjct: 5 KPTAGPAPGVPVGSAPWSSGLCDCFDDYGLCCMTWWCPCITFGRVAEIVDRGSTSCGHSG 64
Query: 63 ALYALLGCTCTYRGKMRAQHGLGDAAXXXXXXXXXXXXXXXXQEYRELVARGYDPKLGWH 122
ALY L ++ M DA EYREL ARGYDPKLGWH
Sbjct: 65 ALYVFLAVITGFQW-MYLHLPRQDARPVRPLRRALRRLLHPLLEYRELAARGYDPKLGWH 123
Query: 123 LNVERGXXXXXXXXXXXXVQHMGR 146
LN+ER VQHMGR
Sbjct: 124 LNMER----RAAAAAAPAVQHMGR 143
>Os02g0579800 Similar to Fw2.2
Length = 162
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 12 VPIGSAAWSXXXXXXXXXXXXXXXXXXXXXXXFGRVAEIVDRGSTSFGTGGALYALL--- 68
VP+ AAWS FG++AEI+DRGS+S GT GALYAL+
Sbjct: 22 VPL--AAWSTGLFNCFDDCGNCCVTCLCPCITFGQIAEIIDRGSSSCGTSGALYALVMLL 79
Query: 69 -GCTCT----YRGKMRAQHGLGDAAXXXXXXXXXXXXXXXXQEYRELVARGYDPKLGWHL 123
GC C YR KMR+Q+GL + QEYREL RG+D LGWH
Sbjct: 80 TGCNCVYSCFYRAKMRSQYGLQEKPCADCPVHFFCEPCALSQEYRELKKRGFDMNLGWHA 139
Query: 124 NVER 127
N+ER
Sbjct: 140 NMER 143
>Os04g0461600 Similar to Fw2.2
Length = 179
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 44 FGRVAEIVDRGSTSFGTGGALYALLG------C--TCTYRGKMRAQHGLGDAAXXXXXXX 95
FGR+AEIVD+G+TS G LY LL C +C YR ++ Q+GL +
Sbjct: 70 FGRIAEIVDQGATSCCARGTLYMLLAMATGFACAYSCCYRSRLHQQYGLQEKPCGDCCVH 129
Query: 96 XXXXXXXXXQEYRELVARGYDPKLGWHLNVER 127
QEYREL +RG+D LGW N+ER
Sbjct: 130 WCCGPCALCQEYRELKSRGFDMSLGWQGNMER 161
>Os02g0763000 Protein of unknown function Cys-rich family protein
Length = 181
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 44 FGRVAEIVDRGSTSFGTGGALYALL-----GC--TCTYRGKMRAQHGLGDAAXXXXXXXX 96
FG+VA+IVD+G+ G YALL GC +C YR KMRAQ L +
Sbjct: 69 FGQVADIVDKGTCPCLASGTAYALLCASGMGCLYSCFYRSKMRAQFDLDEGDCPDFLVHF 128
Query: 97 XXXXXXXXQEYRELVARGYDPKLGWHLNVER 127
QEYREL RG+D +GW NV+R
Sbjct: 129 CCEYCALCQEYRELKNRGFDLGIGWAANVDR 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,530,872
Number of extensions: 88503
Number of successful extensions: 161
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 8
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)