BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0828300 Os03g0828300|AK107037
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0828300 Similar to (1-4)-beta-mannan endohydrolase-lik... 286 5e-78
Os03g0828500 Similar to (1-4)-beta-mannan endohydrolase pre... 233 5e-62
Os02g0766900 Similar to (1-4)-beta-mannan endohydrolase pre... 162 1e-40
Os01g0663300 Similar to (1-4)-beta-mannan endohydrolase-lik... 141 2e-34
Os05g0319100 137 4e-33
Os12g0117250 Glycoside hydrolase, family 5 protein 136 1e-32
Os11g0118200 Hypothetical protein 130 4e-31
Os01g0746700 Glycoside hydrolase, family 5 protein 122 2e-28
>Os03g0828300 Similar to (1-4)-beta-mannan endohydrolase-like protein
Length = 189
Score = 286 bits (733), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 144/189 (76%), Positives = 144/189 (76%)
Query: 1 MAAMTVRPRPXXXXXXXXXXXXXXXXXXXXXXXXXDGTQFVVEGGRTIYFSGFNAYWLMM 60
MAAMTVRPRP DGTQFVVEGGRTIYFSGFNAYWLMM
Sbjct: 1 MAAMTVRPRPAAAAIIIAAVFGAAAAAAGGGMVGVDGTQFVVEGGRTIYFSGFNAYWLMM 60
Query: 61 MXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGDQPLQSSPGVYDEAMFQGLDFVIAE 120
M GLNLARTWAFSDGGDQPLQSSPGVYDEAMFQGLDFVIAE
Sbjct: 61 MASDPARRAAVVAAFAQASSRGLNLARTWAFSDGGDQPLQSSPGVYDEAMFQGLDFVIAE 120
Query: 121 ARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNLTAGDDFFTSSVVKSYYKNHVKVRH 180
ARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNLTAGDDFFTSSVVKSYYKNHVKVRH
Sbjct: 121 ARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNLTAGDDFFTSSVVKSYYKNHVKVRH 180
Query: 181 NRYIHTSIY 189
NRYIHTSIY
Sbjct: 181 NRYIHTSIY 189
>Os03g0828500 Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78)
Length = 461
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/147 (75%), Positives = 119/147 (80%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGG 95
DGTQFVV+ GRTI+FSGFNAYWLMMM GLNLARTWAFSDGG
Sbjct: 27 DGTQFVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGG 86
Query: 96 DQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHN 155
DQPLQSSPGVY+E MFQGLDFVIAEARRHGIYLLLCLTNNFD+FGGKRQYVRWA DAGHN
Sbjct: 87 DQPLQSSPGVYNETMFQGLDFVIAEARRHGIYLLLCLTNNFDNFGGKRQYVRWAGDAGHN 146
Query: 156 LTAGDDFFTSSVVKSYYKNHVKVRHNR 182
LT+ DDFFTS++VKSY+KNHVK R
Sbjct: 147 LTSDDDFFTSTIVKSYFKNHVKTVLTR 173
>Os02g0766900 Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78)
Length = 407
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
GT+F V GGR Y +GFNAYWLM M L RTWAFSDGG
Sbjct: 44 GTRFTV-GGRPFYSNGFNAYWLMYMASDPGDRSKAAGVLQQAASLRATLVRTWAFSDGGY 102
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+PLQ SPGVY+E MF GLDFVIAEA++ G+YL+L L NN+D FGGK+QYV+WA D GHNL
Sbjct: 103 RPLQKSPGVYNEDMFMGLDFVIAEAKKRGLYLILSLVNNWDGFGGKKQYVQWARDQGHNL 162
Query: 157 TAGDDFFTSSVVKSYYKNH-VKVRHNR 182
+ DDFF S V K +YKNH V R N+
Sbjct: 163 GSDDDFFRSDVTKQFYKNHAVLTRVNK 189
>Os01g0663300 Similar to (1-4)-beta-mannan endohydrolase-like protein
Length = 403
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
GT+FV++G Y +GFNAYWLM++ GL +ARTWAFSDGG
Sbjct: 42 GTRFVLDG-NPYYANGFNAYWLMLLAADPSQRGKVSAALGEAAGHGLTVARTWAFSDGGG 100
Query: 97 -QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHN 155
LQ SPG Y+E F+GLDFV++EAR++GI ++L L +N+D FGG++QYV WA G
Sbjct: 101 GNALQLSPGNYNENTFKGLDFVLSEARKYGIKVILSLVDNYDSFGGRKQYVNWARAQGQG 160
Query: 156 LTAGDDFFTSSVVKSYYKNHVKV 178
+ + D+FFT+ VVK +YKNHVK
Sbjct: 161 IGSDDEFFTNPVVKGFYKNHVKT 183
>Os05g0319100
Length = 491
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
G QFVV GGR Y +GFN YWLM++ GL + RTWAF+DGG
Sbjct: 82 GAQFVVGGGRPFYVNGFNTYWLMVLAVDPSTRGKVTEVFRQAAAVGLTVCRTWAFNDGGW 141
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ SPGVYDE +F+ LDFV++EAR+H I L+L L NN+DD+GGK QYVRWA A
Sbjct: 142 RALQKSPGVYDEEVFKALDFVVSEARKHKIRLILPLINNWDDYGGKAQYVRWAQ-AAAAG 200
Query: 157 TAGDDFFTSSVVKSYYKNHV 176
D FF+ V+ Y+K+HV
Sbjct: 201 AGADAFFSDETVRGYFKSHV 220
>Os12g0117250 Glycoside hydrolase, family 5 protein
Length = 360
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
GTQ GR GFN YWLM GLN+ RTWAFSDGG
Sbjct: 16 GTQLWA-SGRPFIIHGFNTYWLMSFAADQATRPRVTAAIAEAAEAGLNVCRTWAFSDGGY 74
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ+ P YDE +FQ LDFV++EA+RH + L+L L NN++D+GGK QYVRW +AG +L
Sbjct: 75 RALQTVPFHYDEDVFQALDFVVSEAKRHNMRLILSLCNNWEDYGGKAQYVRWGKEAGLDL 134
Query: 157 TAGDDFFTSSVVKSYYKNHVKVRHNR 182
T+ DDFF+ +KSYYK V+ R
Sbjct: 135 TSEDDFFSDPTIKSYYKAFVEAVVTR 160
>Os11g0118200 Hypothetical protein
Length = 202
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
GTQ GR GFN YWLM GLN+ TWAFSDGG
Sbjct: 16 GTQLWA-SGRPFIIHGFNTYWLMSFAADQATRLRVTAAIAEA---GLNVCCTWAFSDGGY 71
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ++P YDE +F+ LDFV++EARRH + L+L L NN++D+GGK QYVRW +AG +L
Sbjct: 72 RALQTAPFHYDEDVFRALDFVVSEARRHNMRLILSLCNNWEDYGGKAQYVRWGKEAGLDL 131
Query: 157 TAGDDFFTSSVVKSYYKNHVK 177
T+ DDFF+ +KSYYK V+
Sbjct: 132 TSEDDFFSDPTIKSYYKAFVE 152
>Os01g0746700 Glycoside hydrolase, family 5 protein
Length = 445
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 45 GRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGDQPLQSSPG 104
GR Y +G+N+YWLM + GL + RTWAF+DG LQ SPG
Sbjct: 66 GRPFYINGWNSYWLMDLAVEPNTRPRVSSMFRTAVSMGLTVCRTWAFNDGSYNALQLSPG 125
Query: 105 VYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNLTAGDD-FF 163
+DE +F+ LD V+AEA HG+ L+L L NN D +GGKRQYVRWA + G LTA +D FF
Sbjct: 126 HFDERVFKALDRVVAEASEHGVRLILSLANNLDAYGGKRQYVRWAWEEGVGLTASNDSFF 185
Query: 164 TSSVVKSYYKNHVKVRHNRYIHTS 187
++ Y+K ++K R H +
Sbjct: 186 FDPAIRDYFKVYLKTLLMRKNHLT 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,380,688
Number of extensions: 184177
Number of successful extensions: 389
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 8
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)