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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0663300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to (1-4)-beta-mannan endohydrolase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.85 (0.088) R2 : 0.422
β1 : -2.5 (0.323) R2dD : 0.109 R2D : 0.00748
β2 : 1.81 (0.201) R2dC : 0.107 R2C : -0.0138
β3 : -2.69 (0.419) R2dE : 0.0514 R2E : -0.0155
β4 : 2.29 (0.815) R2dD*C : 0.0109 R2D*C : -0.105
β5 : -11.2 (1.54) R2dD*E : 0.0763 R2D*E : -0.111
γ1 : -1.91 (0.183) R2dN8 : 0.21 R2N8 : 0.0874
σ : 1.51
deviance : 1038.74
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C
peak time of C : 14.6
E
wheather : radiation
threshold : 40.87
memory length : 1441
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 5.99

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1038.74 1.51 6.85 -2.5 1.81 -2.69 2.29 -11.2 -1.91 14.6 40.87 1441 18 5.99
1143.9 1.59 6.62 -3.42 1.58 -0.51 2.02 -- -1.9 14.2 40.87 1441 18 5.99
1056.73 1.51 6.84 -2.52 1.8 -2.45 -- -11 -1.93 14.4 39.61 1440 18 6.01
1155.03 1.58 6.61 -3.38 1.54 -0.512 -- -- -1.89 14.4 68.19 1440 19 5.8
1217.58 1.63 6.84 -2.57 -- -2.35 -- -9.11 -2.02 -- 46.1 1440 18 6.05
1151.52 1.59 6.61 -3.43 1.65 -- 1.96 -- -1.91 13.3 -- -- -- --
1167.29 1.6 6.6 -3.36 1.65 -- -- -- -1.9 13.3 -- -- -- --
1160.41 1.59 6.57 -3.1 -- -1.32 -- -- -1.86 -- 120 9434 17.2 3.67
1455.2 1.79 6.54 -- 1.47 -0.528 -- -- -1.54 14.5 155.7 1454 18.8 5.93
1335.27 1.71 6.63 -3.43 -- -- -- -- -1.93 -- -- -- -- --
1465.34 1.79 6.52 -- 1.71 -- -- -- -1.52 13.4 -- -- -- --
1436.77 1.77 6.54 -- -- -1.28 -- -- -1.72 -- 34.94 9461 17 3.38
1645.16 1.89 6.54 -- -- -- -- -- -1.55 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1042.26 radiation 40 1440 < th dose dependent rect. 18 6
7 1052.83 radiation 20 14400 < th dose independent rect. 24 6
11 1060.55 temperature 25 1440 > th dose dependent rect. 15 2
15 1061.71 radiation 30 1440 > th dose independent rect. 16 16
16 1062.15 radiation 30 14400 < th dose independent rect. 16 8
20 1063.12 humidity 70 720 > th dose independent rect. 18 9
21 1063.24 temperature 25 1440 > th dose dependent rect. 15 19
22 1063.39 temperature 25 1440 > th dose dependent rect. 15 21
35 1064.31 temperature 25 1440 > th dose dependent rect. 15 9
45 1065.03 temperature 25 1440 > th dose dependent rect. 7 17
49 1065.10 radiation 30 1440 < th dose independent rect. 6 2
59 1065.43 temperature 25 1440 > th dose dependent rect. 7 12
81 1065.85 radiation 30 14400 < th dose independent rect. 16 1
95 1065.99 wind 5 43200 > th dose dependent rect. 12 3
122 1066.29 temperature 25 1440 > th dose dependent sin 21 NA
123 1066.29 wind 5 43200 > th dose dependent rect. 13 1
133 1066.37 humidity 70 720 > th dose independent rect. 18 3
141 1066.46 temperature 25 1440 > th dose dependent rect. 21 22
165 1066.65 temperature 25 1440 > th dose dependent rect. 11 23
171 1066.77 temperature 25 1440 > th dose dependent no NA NA
182 1066.88 temperature 25 1440 > th dose dependent rect. 18 23
241 1067.56 radiation 20 90 < th dose dependent rect. 5 22
279 1068.09 temperature 25 1440 > th dose independent rect. 15 9
301 1068.44 radiation 30 1440 < th dose independent rect. 17 15
307 1068.53 humidity 50 1440 < th dose independent rect. 16 1
310 1068.58 temperature 15 90 > th dose dependent rect. 23 6
334 1069.08 humidity 50 1440 < th dose dependent rect. 16 1
355 1069.64 temperature 25 1440 < th dose independent rect. 15 9
362 1069.76 wind 7 43200 < th dose independent rect. 12 4
382 1070.37 wind 5 43200 > th dose dependent rect. 11 11
390 1070.45 temperature 25 720 > th dose dependent rect. 21 2
392 1070.56 temperature 20 90 > th dose dependent rect. 3 2
407 1070.93 wind 5 43200 > th dose independent rect. 10 5
408 1070.93 radiation 40 14400 > th dose dependent rect. 15 17
414 1071.02 wind 7 43200 > th dose independent rect. 12 4
442 1071.65 wind 7 43200 < th dose independent rect. 11 11
446 1071.75 radiation 30 14400 > th dose independent rect. 16 1
462 1071.78 wind 7 43200 < th dose independent rect. 11 9
480 1072.05 temperature 25 1440 > th dose dependent rect. 11 1
496 1072.26 wind 7 43200 > th dose independent rect. 11 9
499 1072.38 wind 7 43200 > th dose independent rect. 11 11
503 1072.38 temperature 30 30 < th dose dependent rect. 5 23
509 1072.44 humidity 70 720 < th dose independent rect. 17 15
553 1072.88 temperature 30 720 < th dose independent rect. 18 9
587 1073.22 wind 7 43200 < th dose independent sin 21 NA
593 1073.27 radiation 40 14400 > th dose independent rect. 15 17
611 1073.49 temperature 20 90 > th dose independent rect. 23 6
629 1073.69 wind 7 43200 > th dose independent sin 21 NA
654 1073.90 wind 7 43200 < th dose independent rect. 11 19
666 1074.01 radiation 20 14400 < th dose independent rect. 3 3
676 1074.16 wind 7 43200 > th dose independent rect. 11 19
696 1074.33 radiation 30 1440 > th dose independent rect. 7 1
714 1074.34 humidity 70 720 < th dose independent rect. 17 3
752 1074.55 temperature 25 1440 > th dose dependent rect. 7 2
768 1074.74 wind 5 43200 > th dose dependent rect. 11 19
800 1074.94 radiation 30 1440 < th dose independent rect. 2 6
832 1075.10 wind 7 43200 < th dose independent rect. 5 13
841 1075.18 wind 7 43200 < th dose independent rect. 5 15
861 1075.32 wind 5 43200 > th dose dependent sin 20 NA
875 1075.40 temperature 10 1440 > th dose dependent rect. 16 1
876 1075.40 radiation 30 14400 > th dose dependent rect. 16 1
927 1075.68 wind 7 43200 > th dose independent rect. 5 15
930 1075.71 wind 7 43200 > th dose independent rect. 5 13