BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0784100 Os03g0784100|Os03g0784100
(462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0784100 Patatin family protein 687 0.0
Os07g0144500 Patatin family protein 347 9e-96
Os03g0640000 Patatin family protein 271 8e-73
Os03g0254400 Patatin family protein 238 9e-63
Os06g0677000 Patatin family protein 204 1e-52
Os12g0611300 Patatin family protein 166 3e-41
Os06g0285300 79 1e-14
Os08g0376500 Similar to Patatin-like protein 2 (Fragment) 71 2e-12
>Os03g0784100 Patatin family protein
Length = 462
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/462 (77%), Positives = 359/462 (77%)
Query: 1 MEPXXXXXXGQLDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAV 60
MEP GQLDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAV
Sbjct: 1 MEPAAAAAAGQLDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAV 60
Query: 61 VERGKVCVLSIDXXXXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXXX 120
VERGKVCVLSID RRRTGDETARLADFFD
Sbjct: 61 VERGKVCVLSIDGGGRAADGLLAGAALVSLEASLRRRTGDETARLADFFDVAAGSGAGGV 120
Query: 121 XXXXXXXXXXDGRPMFSAEDALAFLMRSLRRGWSXXXXXXXXXXIRALFRRPGAAFRKVF 180
DGRPMFSAEDALAFLMRSLRRGWS IRALFRRPGAAFRKVF
Sbjct: 121 LAAMLVARGGDGRPMFSAEDALAFLMRSLRRGWSGGGGGGAAGGIRALFRRPGAAFRKVF 180
Query: 181 GDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAV 240
GDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAV
Sbjct: 181 GDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAV 240
Query: 241 EVRSSDGATRIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECDNR 300
EVRSSDGATRIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECDNR
Sbjct: 241 EVRSSDGATRIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECDNR 300
Query: 301 PTGGAAASTSEIVRIAAEGXXXXXXXXXXXXFGHNRTNNYIRIQAMGSPRASRXXXXXXX 360
PTGGAAASTSEIVRIAAEG FGHNRTNNYIRIQAMGSPRASR
Sbjct: 301 PTGGAAASTSEIVRIAAEGVADMVDQAVAMAFGHNRTNNYIRIQAMGSPRASRGGMRCGG 360
Query: 361 XXXXXXXXXXVAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDRRRTAGAL 420
VAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDRRRTAGAL
Sbjct: 361 GGGGDGAGWGVAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDRRRTAGAL 420
Query: 421 APAVVKQQPSESXXXXXXXXXXXXXXXXSYSNLVSQMFTTIL 462
APAVVKQQPSES SYSNLVSQMFTTIL
Sbjct: 421 APAVVKQQPSESAPATAAAADGHTPPPTSYSNLVSQMFTTIL 462
>Os07g0144500 Patatin family protein
Length = 413
Score = 347 bits (891), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 208/408 (50%), Positives = 242/408 (59%), Gaps = 24/408 (5%)
Query: 10 GQLDV-DKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAVVERGKVCV 68
GQ D D+LTYEIFSILESKFLFGY + +L P V +VCV
Sbjct: 4 GQDDAADRLTYEIFSILESKFLFGYGGGGGGETK----------SLQCAPPVSRGNRVCV 53
Query: 69 LSIDXXXXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXXXXXXXXXXX 128
LS+D +RR G + ARLADFFD
Sbjct: 54 LSVDGGARPEDGLLAAAALVRLEAAVQRRAGSKAARLADFFDVAAGSGAGGVLAAMLFAR 113
Query: 129 XXDGRPMFSAEDALAFLMRSLRR-GWSXXXXXXXXXXIRALFRRPGAAFRKVFGDLTLRD 187
GRPM+SA+DAL FL+R +RR GWS L RRP AF KVFG+LTLRD
Sbjct: 114 GPCGRPMYSADDALGFLLRRVRRRGWSSRAG--------GLLRRPAGAFHKVFGELTLRD 165
Query: 188 TVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAVEVRSSDG 247
TVRPVLVPCYDLA+ PFLFSRADA ++ AYDFRLRD CAATCA S G A AVE S DG
Sbjct: 166 TVRPVLVPCYDLATRAPFLFSRADAAQSPAYDFRLRDACAATCAPSGGGA-AVEASSVDG 224
Query: 248 ATRIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECDNRPTGGAAA 307
TRI AVG G+ALGNPTAAAITHVLNN+REFP AAGV++LLVISIG+GE + A
Sbjct: 225 VTRITAVGSGVALGNPTAAAITHVLNNRREFPAAAGVDNLLVISIGTGEAAG-SSSRHRA 283
Query: 308 STSEIVRIAAEGXXXXXXXXXXXXFGHNRTNNYIRIQAMGSPRASRXXXXXXXXXXXXXX 367
T I RIAAEG FG +RT+NY+RIQ MG R R
Sbjct: 284 RTPVIARIAAEGASDMVDQAVAMAFGQHRTSNYVRIQGMGVAR--RRGGGVACGGETAEK 341
Query: 368 XXXVAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDRRR 415
VAE ML Q+NVE+V+F+G++LA +TNAEK+E FA EL+KE RR+
Sbjct: 342 AVWVAEAMLQQRNVEAVMFQGRRLAGETNAEKVERFARELIKEHGRRK 389
>Os03g0640000 Patatin family protein
Length = 441
Score = 271 bits (693), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 187/434 (43%), Positives = 239/434 (55%), Gaps = 52/434 (11%)
Query: 12 LDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAVVER-------- 63
+D DKL+YEIFS+LESKFLFG +GG G L+ GP R
Sbjct: 8 MDADKLSYEIFSLLESKFLFG--------AGGG-------GCLSSGPCTPARPFLGGGGG 52
Query: 64 --GKVCVLSIDX--XXXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXX 119
G+V VL+ID R+RTGD AR+ADFFD
Sbjct: 53 MDGRVRVLAIDGCGSSGAGDALLAAAALARLEAGLRKRTGDSDARVADFFDVAAGAGAGG 112
Query: 120 XXXXXXXXXXXDGRPMFSAEDALAFLMRSLRRGWSXXXXXXXXXXIRALFRRPGAAFRKV 179
DGRP ++AE+AL F+ S+ R W+ R R +FR+V
Sbjct: 113 VLAAMLFLRGPDGRPRYTAEEALEFVAASVGRDWAGRRGRWARL-FRGGARGAERSFRRV 171
Query: 180 FGDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASA 239
FGD TL+DTV P+LVPCYDLA+A PF+FSRADAVE+ +YDF LRDVCAATCA ++A
Sbjct: 172 FGDATLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVCAATCA---AGSTA 228
Query: 240 VEVRSSDGATRIAAVGGGL-ALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECD 298
VRS DG T IAA GG+ A+GNP AAAITHVL+NK+EFPLA V+D+LV+SIG+G
Sbjct: 229 AAVRSVDGRTAIAAASGGVAAMGNPAAAAITHVLHNKQEFPLATTVDDILVLSIGTGAST 288
Query: 299 N---RPTGGAAASTSEIVRIAAEGXXXXXXXXXXXXFGHN--RTNNYIRIQAMGSPRASR 353
+ P + S E+ R+ AEG FGH ++NY+RIQA
Sbjct: 289 SATATPMPTRSPSPREMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQA-------- 340
Query: 354 XXXXXXXXXXXXXXXXXVAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDR 413
A MLSQ+NVESVLFRG++++E+TNAEK++ A E+VKE +R
Sbjct: 341 ------SKAATALHGAAAAGAMLSQRNVESVLFRGRRMSERTNAEKVDAAAAEVVKEHER 394
Query: 414 RRTAGALAPAVVKQ 427
RR + L V+KQ
Sbjct: 395 RRRS-PLPNVVIKQ 407
>Os03g0254400 Patatin family protein
Length = 469
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 171/446 (38%), Positives = 213/446 (47%), Gaps = 34/446 (7%)
Query: 10 GQLDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAVVERGKVCVL 69
G D DKL+YEIFSILESKFLFGY DP ++ A T +RGKVCVL
Sbjct: 19 GGADTDKLSYEIFSILESKFLFGYTDPHQLWLPKAPAAQASAATAVPSGKAAQRGKVCVL 78
Query: 70 SIDXXXXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXXXXXXXXXXXX 129
+D RR +GD AR+AD+FD
Sbjct: 79 CVDGGGGGLRALLSGRALAHLEAALRRASGDPDARVADYFDLVAGTGAGGVFAAMLFSTH 138
Query: 130 XDGRPMFSAEDALAFLMRSLRRGWSXXXXXXXXXXIRALFRRP------------GAAFR 177
G P+F A+D + R + +LF RP AA +
Sbjct: 139 SRGAPLFHADDTWRLVADHAPRLFRKAVGGST-----SLFCRPKKRPLAAPTAALDAAMK 193
Query: 178 KVFGD-LTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGS 236
FG+ LTLRDT++PVL+ CYDL S+ P +FSRADA+E+ +YDFRL +V A + + G
Sbjct: 194 TAFGEELTLRDTIKPVLISCYDLKSSAPLVFSRADALESESYDFRLCEVGRAAWSEA-GR 252
Query: 237 ASAVEVRSSDGATRIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGE 296
EV S DGAT AAV GG +G+P AAAITHVL+NK EFP GVEDLLV+SIG
Sbjct: 253 FEPAEVASVDGATSCAAVDGGPIMGSPAAAAITHVLHNKHEFPFVRGVEDLLVLSIGGCS 312
Query: 297 CDNRPTG-----------GAAASTSEIVRIAAEGXXXXXXXXXXXXFGHNRTNNYIRIQA 345
G I RIAA+G FG R++NY+RIQA
Sbjct: 313 AGGTGAAADADLRRLRRWGPKDWARPIARIAADGAADLVDHAVARAFGQCRSSNYLRIQA 372
Query: 346 M-GSPRASRXXXXXXXXXXXXXXXXXVAEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFA 404
S A+EML +NVESVLF G+++ EQTNAE+L+ FA
Sbjct: 373 KRESMPPCGPDGEYDPTPANVHALLAAADEMLKHRNVESVLFEGRRVGEQTNAERLDCFA 432
Query: 405 HELVKERDRRRTAGALAPAVV-KQQP 429
ELV E R + P V KQ P
Sbjct: 433 AELVAE--HRSRGSRIGPTVAFKQAP 456
>Os06g0677000 Patatin family protein
Length = 450
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/419 (37%), Positives = 204/419 (48%), Gaps = 61/419 (14%)
Query: 15 DKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAVVERGKVCVLSIDXX 74
D+L+ EIFSILES FLFG P + P G G+V VLSID
Sbjct: 65 DRLSQEIFSILESNFLFGAPPP-------EGPAGYYSSV----------GRVRVLSIDGG 107
Query: 75 XXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXXXXXXXXXXXXXDGRP 134
+ +G+ AR+AD+FD P
Sbjct: 108 ADGGALAAAALVRLERRL--KELSGNPDARVADYFDLAAGSGAGGFLAAALFACRM---P 162
Query: 135 MFSAEDALAFLMRSLRRGWSXXXXXXXXXXIRALFRRPGAAFRKVFGDLTLRDTVRPVLV 194
+A D +A R+ +S LF RP + F+KVFGDLT+RD +P+L+
Sbjct: 163 AEAARDVVA----RNRKVFSGRRGRGG-----GLFWRPESVFKKVFGDLTVRDAAKPLLI 213
Query: 195 PCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAVEVRSSDGATRI--- 251
PCYD+A+A PF+FSRADAVE A+DF L VCAA C EV S DG TR+
Sbjct: 214 PCYDMATAAPFVFSRADAVEADAFDFPLWQVCAAACG-----VGPAEVASLDGRTRLRAA 268
Query: 252 AAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECDNRPTGGAAASTSE 311
AA GGG A+ NP A A+THVL+NKREFP AAG DL+V+S+G N G AS+S
Sbjct: 269 AATGGGGAVSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGG----NNAAAGPRASSSS 324
Query: 312 IVRIAAEGXXXXXXXXXXXXFGHNRTNNYIRIQAMGSPRASRXXXXXXXXXXXXXXXXXV 371
++RIA FG R NYIRIQ G
Sbjct: 325 LLRIAGACQADMVDQAVSMAFGECRATNYIRIQGNG---------------IVAGAAAAT 369
Query: 372 AEEMLSQKNVESVLFRGKKLAEQTNAEKLEWFAHELVKERDRRRTAGALAPAVVKQQPS 430
AE +++++VESVLFRGKK+ QTN E+L+ A +LV+E RR + A VV +PS
Sbjct: 370 AEAAMTERSVESVLFRGKKVMAQTNGERLDGVAEQLVREHHRRMESKA---PVVLIKPS 425
>Os12g0611300 Patatin family protein
Length = 359
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/330 (43%), Positives = 178/330 (53%), Gaps = 36/330 (10%)
Query: 12 LDVDKLTYEIFSILESKFLFGYDDPKL--VFSGGDEPQGAVKGTLARGPAVVERGKVCVL 69
+D+ KL+YEIFS+LES FLFG V S P A+ G GKV VL
Sbjct: 15 VDLGKLSYEIFSLLESNFLFGAGAGGGGGVCSLPGTPGRALLG-----------GKVRVL 63
Query: 70 SIDX-XXXXXXXXXXXXXXXXXXXXXRRRTGDETARLADFFDXXXXXXXXXXXXXXXXXX 128
+ID R ++GD AR+ADFFD
Sbjct: 64 AIDGCGPGPGDALLAAAALVRLETALREKSGDGDARVADFFDAAAGAGAGGVLAAMLFLK 123
Query: 129 XXDGRPMFSAEDALAFLMRSLRRGWSXXXXXXXXXX----IRALFRRPGAA----FRKVF 180
DGRP ++A DALAF+ SL +G + ALFRR +A R+VF
Sbjct: 124 GADGRPRYTAADALAFVAASLGKGGWRGGGGGGGGRRWWGVAALFRRGSSAERSSLRRVF 183
Query: 181 GDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAV 240
GD TV P+LVPCYDLA+A PFLFSRADAVE+ ++DFRLRDVCAATCA G A+A
Sbjct: 184 GDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVCAATCA---GGAAAT 240
Query: 241 EVRSSDGATRIAAVGGGL-ALGNPTAAAITHVLNNKREFPLAAGVEDLL----------V 289
VRS DG T IAA GG+ A+GNPTAAAITHVL+NK+EFPLAAGV+DLL
Sbjct: 241 AVRSVDGRTAIAAASGGVAAMGNPTAAAITHVLHNKQEFPLAAGVDDLLVVSIGSGSSSA 300
Query: 290 ISIGSGECDNRPTGGAAASTSEIVRIAAEG 319
+ + P + S +E+VR+ AEG
Sbjct: 301 ATPSTAAGWRTPLPSRSPSPAEMVRLTAEG 330
>Os06g0285300
Length = 180
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 13/119 (10%)
Query: 165 IRALFRRPGAAF---RKVFGDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFR 221
+ LFR+ A + R VF D TL + +PC DLA A FLFS AD+VE+A++ FR
Sbjct: 60 VAVLFRQGSAEWSSIRWVFRDATL------LFIPCNDLAIAALFLFSHADSVESASFHFR 113
Query: 222 LRDVCAATCAGSDGSASAVEVRSSDGATRIAAVGGGLA-LGNPTAAA-ITHVLNNKREF 278
L D C TC G G+ + V S D T IAA G +A +G A A ITH+L++K++
Sbjct: 114 LHDFCMGTCLG--GATTTAAVGSVDDRTTIAAASGSVAVMGYSIATAIITHMLHSKQDL 170
>Os08g0376500 Similar to Patatin-like protein 2 (Fragment)
Length = 442
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 103 ARLADFFDXXXXXXXXXXXXXXXXXXXXDGRPMFSAEDALAFLMRS-------LRRGWSX 155
AR+AD+FD DGRP+F+A+D + F +R + +G
Sbjct: 90 ARVADYFDVIAGTSTGGLVTAMLAAPGADGRPLFAAKDIVDFYLRHSPKIFPPVIKGPLG 149
Query: 156 XXXXXXXXXIRALFRRPGAAFRKVFGDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVET 215
+ R + +++ GD + + V++P +D+ P +FSR DA +
Sbjct: 150 LLKSMMGPKYDGRYLR--SIVQELLGDTRISQAITNVVIPTFDIKLLQPTIFSRFDAQKD 207
Query: 216 AAYDFRLRDVCAATCAGSDG-SASAVEVRSSDGATRI-AAVGGGLALGNPTAAAITHV-- 271
A+ + L DVC +T A E + G R+ + GG+A NPT A+THV
Sbjct: 208 ASKNALLSDVCISTSAAPTYLPGHRFETKDKAGQPRVFNLIDGGVAANNPTLVAMTHVSK 267
Query: 272 ---LNNKREFPL-AAGVEDLLVISIGSGEC 297
L N+ FP+ A +V+S+ +G
Sbjct: 268 QILLGNQDFFPIKPADYGKFMVLSLSTGSA 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,607,001
Number of extensions: 418690
Number of successful extensions: 1404
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 9
Length of query: 462
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 358
Effective length of database: 11,605,545
Effective search space: 4154785110
Effective search space used: 4154785110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)