BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0764100 Os03g0764100|AK072942
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0764100 Zinc finger transcription factor ZF1 353 7e-98
Os12g0583700 Zinc finger, C2H2-type domain containing protein 119 2e-27
Os03g0610400 Zinc finger, C2H2-type domain containing protein 107 8e-24
Os03g0437100 Zinc finger, C2H2-type domain containing protein 103 1e-22
Os03g0437200 Zinc finger, C2H2-type domain containing protein 102 3e-22
Os07g0209600 99 2e-21
Os07g0588600 Zinc finger, C2H2-type domain containing protein 96 2e-20
Os08g0300400 83 3e-16
Os07g0590100 Zinc finger, C2H2-type domain containing protein 71 1e-12
>Os03g0764100 Zinc finger transcription factor ZF1
Length = 269
Score = 353 bits (906), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 190/269 (70%), Positives = 190/269 (70%)
Query: 1 MSSASSMEALHAAVLKEEQQQHXXXXXXXXXXXXXXXXXXXXHLPQGWAXXXXXXXXXXX 60
MSSASSMEALHAAVLKEEQQQH HLPQGWA
Sbjct: 1 MSSASSMEALHAAVLKEEQQQHEVEEATVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSE 60
Query: 61 XXNLALCLLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHR 120
NLALCLLMLARGGHHRVQ EFKCSVCGKSFSSYQALGGHKTSHR
Sbjct: 61 EENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSHR 120
Query: 121 VKXXXXXXXXXXXXXXXXXXXXXXEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQA 180
VK EDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQA
Sbjct: 121 VKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQA 180
Query: 181 LGGHKRKHYDXXXXXXXXXSSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWR 240
LGGHKRKHYD SSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWR
Sbjct: 181 LGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWR 240
Query: 241 PCSKGKKMWDEEEEVQSPLAFKKPRLLTA 269
PCSKGKKMWDEEEEVQSPLAFKKPRLLTA
Sbjct: 241 PCSKGKKMWDEEEEVQSPLAFKKPRLLTA 269
>Os12g0583700 Zinc finger, C2H2-type domain containing protein
Length = 247
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 64 LALCLLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHRVKX 123
LALCLLMLARG R E +CSVCGK+F+SYQALGGHK SHR
Sbjct: 61 LALCLLMLARG---RRDGDDVAASASAAAAAVEHRCSVCGKAFASYQALGGHKASHR--- 114
Query: 124 XXXXXXXXXXXXXXXXXXXXXEDREPATSST-----AASSDGMTNRVHRCSICQKEFPTG 178
+ +PA +T + S G R H C++C K FPTG
Sbjct: 115 -------KPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCGKAFPTG 167
Query: 179 QALGGHKRKHYDXXXXXXXXXSSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFV 238
QALGGHKR HYD + A A + +A+R FDLNLPA+P+
Sbjct: 168 QALGGHKRCHYD---------GTIGSAAGAGASKPAAKTTVAVAASRGFDLNLPALPDVA 218
Query: 239 WRPCSKGKKMWDEEEEVQSPLAFKKPRLLT 268
+ ++ E++EV SPLAFKKPRL+
Sbjct: 219 A---AADQRCAAEDDEVLSPLAFKKPRLMI 245
>Os03g0610400 Zinc finger, C2H2-type domain containing protein
Length = 238
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 102/209 (48%), Gaps = 41/209 (19%)
Query: 63 NLALCLLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHRVK 122
+LAL LLMLARG HR + CSVCG+ FSSYQALGGHKTSHR +
Sbjct: 66 HLALSLLMLARG--HR---------DPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPR 114
Query: 123 XXXXXXXXXXXXXXXXXXXXXXEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALG 182
+++S + S G N+VH CS+C+K FPTGQALG
Sbjct: 115 TPPTMAAVVVVDEPAATTASPAAS---SSNSGSGSGGGGGNKVHECSVCKKTFPTGQALG 171
Query: 183 GHKRKHYDXXXXXXXXXSSTELLATVAAESEVGSSGNGQSATRAFDLNLPAV--PEFVWR 240
GHKR HY E +GS G A R FDLNLPAV P+ +
Sbjct: 172 GHKRCHY---------------------EGPIGSGGGAAVAGRGFDLNLPAVALPDIMTE 210
Query: 241 PCSKGKKMWDEEEEVQSPLA-FKKPRLLT 268
C EEEEV SPLA FKKPRL+
Sbjct: 211 RCLPAAA---EEEEVLSPLASFKKPRLMI 236
>Os03g0437100 Zinc finger, C2H2-type domain containing protein
Length = 200
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 30/207 (14%)
Query: 64 LALCLLMLAR---GGHHRVQXXXXXXXXXXXXXXX-EFKCSVCGKSFSSYQALGGHKTSH 119
++LCL+ LA+ GG Q F+CSVCGK+F S+QALGGHK SH
Sbjct: 11 VSLCLMALAQAGVGGQWPAQKQQIDMAPPAPERELLRFRCSVCGKAFPSHQALGGHKASH 70
Query: 120 RVKXXXXXXXXXXXXXXXXXXXXXXEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQ 179
R ED T+S++ ++ HRCS+C + F TGQ
Sbjct: 71 R----KPPTAALPMHVIDAPPPPSAED----TASSSTTTTTSGGGRHRCSVCHRTFATGQ 122
Query: 180 ALGGHKRKHYDXXXXXXXXXSSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVW 239
ALGGHKR HY + L+ V+ + +SG+G S+ R FDLNL VPE V
Sbjct: 123 ALGGHKRCHY------------WDGLSVVSVTAS--ASGSGSSSVRNFDLNLKPVPETV- 167
Query: 240 RPCSKGKKMWDEEEEVQSPLAFKKPRL 266
+ G + W EEEEVQSPL FKK RL
Sbjct: 168 ---AAGVRRWGEEEEVQSPLPFKKRRL 191
>Os03g0437200 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 88/170 (51%), Gaps = 24/170 (14%)
Query: 97 FKCSVCGKSFSSYQALGGHKTSHRVKXXXXXXXXXXXXXXXXXXXXXXEDREPATSSTAA 156
F+C+VCGK+F+SYQALGGHK+SHR D + ++S+AA
Sbjct: 73 FRCTVCGKAFASYQALGGHKSSHR---KPPSPGDHYGAAAAAQQLASAGDSKEDSASSAA 129
Query: 157 SSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDXXXXXXXXXSSTELLATVAAESEVGS 216
S G HRC+IC++ F TGQALGGHKR HY T + S S
Sbjct: 130 GSTG----PHRCTICRRSFATGQALGGHKRCHY--------------WDGTSVSVSVSAS 171
Query: 217 SGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRL 266
+ SA R FDLNL +PE + G K W EEEEVQSPL KK R+
Sbjct: 172 ASAASSAVRNFDLNLMPLPEST---AAAGIKRWAEEEEVQSPLPVKKLRM 218
>Os07g0209600
Length = 188
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 8 EALHAAVLKEEQQQHXXXXXXXXXXXXXXXXXXXXHLPQGWAXXXXXXXXXXXXXNLALC 67
EALHAAVLKEE+QQH HLPQGW NLALC
Sbjct: 40 EALHAAVLKEEEQQHEMEEAAVVTSSSATSGEEGGHLPQGWVKRKRSRRQRSEE-NLALC 98
Query: 68 LLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHRVK 122
LLMLARGGHHRVQ EFKCSV GKSFS YQALGGHKTSH VK
Sbjct: 99 LLMLARGGHHRVQAPPPLSTTGPAPVGAEFKCSVYGKSFSFYQALGGHKTSHWVK 153
>Os07g0588600 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 85/204 (41%), Gaps = 42/204 (20%)
Query: 64 LALCLLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHRVKX 123
LA CLLMLA G R + ++CSVCGK + SYQALGGHKTSHR
Sbjct: 56 LAACLLMLAHG--VRDEAEVVGVAAATAKPQHGYECSVCGKVYGSYQALGGHKTSHR--- 110
Query: 124 XXXXXXXXXXXXXXXXXXXXXEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALGG 183
EP++ A + +VHRCSIC + FP+GQALGG
Sbjct: 111 -----------KPPSPAAEPAAGEEPSSGGVAGEA-----KVHRCSICLRTFPSGQALGG 154
Query: 184 HKRKHYDXXXXXXXXXSSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWRPCS 243
HKR HY+ L A + V + FDLNLPA
Sbjct: 155 HKRLHYEGGAVGDAVKEKNSLKTKAAVATAV---------LKDFDLNLPAA--------- 196
Query: 244 KGKKMWDEEEEVQSPLAFKKPRLL 267
DE E SP K+ RLL
Sbjct: 197 -ATTAGDEAE--SSPPEAKRARLL 217
>Os08g0300400
Length = 335
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 8 EALHAAVLKEEQQQHXXXXXXXXXXXXXXXXXXXXHLPQGWAXXXXXXXXXXXXXNLALC 67
EALHAAVLKEE+QQH HLPQGWA NLALC
Sbjct: 40 EALHAAVLKEEEQQHEVEEAAVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALC 99
Query: 68 LLMLARGGHHRVQXXXXXXXXXXXXXXXEFKCSVCGKSFSSYQALGGHKTSHRVK 122
LLMLA GGHHRVQ EFKCSVCG+SFSSYQALGGHKTSHR K
Sbjct: 100 LLMLALGGHHRVQAPPPLSAPVGA----EFKCSVCGRSFSSYQALGGHKTSHRFK 150
>Os07g0590100 Zinc finger, C2H2-type domain containing protein
Length = 199
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 97 FKCSVCGKSFSSYQALGGHKTSHRVKXXXXXXXXXXXXXXXXXXXXXXEDREPATSSTAA 156
F+CS+CGK+F+SYQALGGHK SHR K R A + A+
Sbjct: 45 FRCSLCGKAFASYQALGGHKASHR-KPSAAAAAPPAHRDVVVAAAPASSGRVAADADAAS 103
Query: 157 SSDGMTNRVHRCSICQKEFPTGQALGGHKRKHY 189
+DG R H CS+C++ F TGQALGGHKR HY
Sbjct: 104 EADGRRRR-HVCSLCRRGFATGQALGGHKRFHY 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.126 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,792,428
Number of extensions: 204744
Number of successful extensions: 786
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 10
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)