BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0720300 Os03g0720300|AK101171
(492 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (... 979 0.0
Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (... 871 0.0
Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1... 812 0.0
Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15) 810 0.0
Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15) 736 0.0
Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.1... 114 2e-25
Os01g0100900 Pyridoxal-dependent decarboxylase family protein 93 6e-19
>Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)
Length = 492
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/492 (96%), Positives = 473/492 (96%)
Query: 1 MVLSHGVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNL 60
MVLSHGVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSHGVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120
ASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG
Sbjct: 61 ASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTP 240
VKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTP
Sbjct: 181 VKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEEL 300
IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEEL 300
Query: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEK 360
IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEK 360
Query: 361 TGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVV 420
TGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVV
Sbjct: 361 TGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVV 420
Query: 421 IREDFSRTLAERLVLDVEKVLHELDALPXXXXXXXXXXXXXXXXXXXMEKQREVISLWKR 480
IREDFSRTLAERLVLDVEKVLHELDALP MEKQREVISLWKR
Sbjct: 421 IREDFSRTLAERLVLDVEKVLHELDALPARVVANGGDAAAASASEREMEKQREVISLWKR 480
Query: 481 AVLAKKKTNGVC 492
AVLAKKKTNGVC
Sbjct: 481 AVLAKKKTNGVC 492
>Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)
Length = 492
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/493 (85%), Positives = 443/493 (89%), Gaps = 2/493 (0%)
Query: 1 MVLSHGVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNL 60
MVLS VS SD SVHSTFASRYVR SLPR+RMPE SIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120
ASFVTTWMEPECDKLI A++NKNYVDMDEYPVTTELQNRCVNMIAHLF+APLG+ ETAVG
Sbjct: 61 ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRRWQNK KA GKP DKPNI+TGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTP 240
VKL DGYYVMDP KAVDMV+ENTICVAAILGSTLNGEFEDVKLLNDLL KKN ETGW+TP
Sbjct: 181 VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVKLLNDLLDKKNKETGWETP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEEL 300
IHVDAASGGFIAPFLYPELEWDFRLP VKSINVSGHKYGLVYAGIGWCIWR+KEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
Query: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEK 360
IFHINYLG DQPTFTLNFSKGSSQVIAQYYQLIR GFEGY+NIMENC ENAMVLK+GL K
Sbjct: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
Query: 361 TGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVV 420
TGRF+IVSKD GVPLVAFSLKD +RH+EFEISD LRRFGWIVPAYTMPPDAQHVTVLRVV
Sbjct: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV 420
Query: 421 IREDFSRTLAERLVLDVEKVLHELDALPXX-XXXXXXXXXXXXXXXXXMEKQREVISLWK 479
IRE+FSRTLAERLVLD+EKV+++LDALP +E QR V WK
Sbjct: 421 IREEFSRTLAERLVLDIEKVMYQLDALPSRLMPPVPPAPLLVVAKKSELETQRSVTEAWK 480
Query: 480 RAVLAKKKTNGVC 492
+ VLA K+TNGVC
Sbjct: 481 KFVLA-KRTNGVC 492
>Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)
Length = 484
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/493 (78%), Positives = 438/493 (88%), Gaps = 10/493 (2%)
Query: 1 MVLSHGVSGSDESVHS-TFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLN 59
M LS +G ES+HS TFASRYVRT+LPRFRMPE+SIPK+AAYQIINDELMLDGNPRLN
Sbjct: 1 MALSTAQTG--ESMHSSTFASRYVRTALPRFRMPEKSIPKDAAYQIINDELMLDGNPRLN 58
Query: 60 LASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAV 119
LASFVTTWMEPECDKL+ A++NKNYVDMDEYPVTTELQNRCVNMIAHLFNAP+GD ETAV
Sbjct: 59 LASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAV 118
Query: 120 GVGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELK 179
GVGTVGSSEAIMLAGLAFKR+WQN+MKA GKP DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 119 GVGTVGSSEAIMLAGLAFKRKWQNRMKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELK 178
Query: 180 EVKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDT 239
EVKL+ GYYVM+P KAV+MVDENTICVAAILGSTLNGEFEDVK+LNDLLT KNAETGW+T
Sbjct: 179 EVKLTQGYYVMNPEKAVEMVDENTICVAAILGSTLNGEFEDVKMLNDLLTAKNAETGWNT 238
Query: 240 PIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEE 299
PIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSGHKYGLVYAG+GW IWR+KEDLP+E
Sbjct: 239 PIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPDE 298
Query: 300 LIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLE 359
LIFHINYLGADQPTFTLNFSKGS+Q+IAQYYQLIRLGFEGYK+IM+NC++NA VL++G+E
Sbjct: 299 LIFHINYLGADQPTFTLNFSKGSNQIIAQYYQLIRLGFEGYKDIMQNCRDNATVLREGIE 358
Query: 360 KTGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRV 419
KTG F++VSKD+GVPLVAFSLKDS+R+ FE+++ LRRFGWIVPAYTMP DA+HV V+RV
Sbjct: 359 KTGHFDVVSKDSGVPLVAFSLKDSSRYTVFEVAESLRRFGWIVPAYTMPADAEHVAVMRV 418
Query: 420 VIREDFSRTLAERLVLDVEKVLHELDALPXXXXXXXXXXXXXXXXXXXMEKQREVISLWK 479
VIREDFSR LAERL+ D+ K + ++DA E ++EV + W
Sbjct: 419 VIREDFSRGLAERLITDLTKTVADMDA------HAVKKAAAEPAKKTVREIEKEVTTYW- 471
Query: 480 RAVLAKKKTNGVC 492
R+ +A+KK++ VC
Sbjct: 472 RSFVARKKSSLVC 484
>Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 501
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/503 (77%), Positives = 427/503 (84%), Gaps = 13/503 (2%)
Query: 1 MVLSHGVSGSDESV---HSTF-ASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNP 56
MV+S + SD + +STF ASRYVR LPRFRMPEQSIP+EAAYQIINDELMLDGNP
Sbjct: 1 MVVSVAATDSDTAQPVQYSTFFASRYVRDPLPRFRMPEQSIPREAAYQIINDELMLDGNP 60
Query: 57 RLNLASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSE 116
RLNLASFVTTWMEPECDKLI SVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAP+ + E
Sbjct: 61 RLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIKEDE 120
Query: 117 TAVGVGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEV 176
TA+GVGTVGSSEAIMLAGLAFKR+WQNK K GKPCDKPNIVTGANVQVCWEKFARYFEV
Sbjct: 121 TAIGVGTVGSSEAIMLAGLAFKRKWQNKRKEQGKPCDKPNIVTGANVQVCWEKFARYFEV 180
Query: 177 ELKEVKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETG 236
ELKEVKLS+GYYVMDP KAV+MVDENTICVAAILGSTL GEFEDVKLLN+LLT+KN ETG
Sbjct: 181 ELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNNLLTEKNKETG 240
Query: 237 WDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDL 296
WD PIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY G+GW IWRSKEDL
Sbjct: 241 WDVPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSKEDL 300
Query: 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQ 356
PEELIFHINYLG DQPTFTLNFSKGSSQ+IAQYYQLIRLGFEGYKNIM+NC EN +L++
Sbjct: 301 PEELIFHINYLGTDQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNIMQNCMENTAILRE 360
Query: 357 GLEKTGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTV 416
G+E TGRF I+SK+ GVPLVAFSLKDS R+ F+IS+ LRRFGWIVPAYTMP +A+HV V
Sbjct: 361 GIEATGRFEILSKEAGVPLVAFSLKDSGRYTVFDISEHLRRFGWIVPAYTMPANAEHVAV 420
Query: 417 LRVVIREDFSRTLAERLVLDVEKVLHELDA-------LPXXXXXXXXXXXXXXXXXXXME 469
LRVVIREDFSR+LAERLV D+ K+LHELDA + +E
Sbjct: 421 LRVVIREDFSRSLAERLVSDIVKILHELDAHSAQVLKISSAIAKQQSGDDGVVTKKSVLE 480
Query: 470 KQREVISLWKRAVLAKKKTNGVC 492
+RE+ + W+ V KKK G+C
Sbjct: 481 TEREIFAYWRDQV--KKKQTGIC 501
>Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 500
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/500 (70%), Positives = 400/500 (80%), Gaps = 8/500 (1%)
Query: 1 MVLSH--GVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRL 58
MVL+H V E+ + FASRYV+ +PR+ + E+SI K+AAYQI++DEL+LD +PRL
Sbjct: 1 MVLTHVEAVEEGSEAAAAVFASRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRL 60
Query: 59 NLASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETA 118
NLASFVTTWMEPECD+LI ++NKNY DMDEYPVTTELQNRCVN+IA LFNAP+GD E A
Sbjct: 61 NLASFVTTWMEPECDRLILEAINKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKA 120
Query: 119 VGVGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVEL 178
VGVGTVGSSEAIMLAGLAFKRRWQN+ KAAGKP DKPNIVTGANVQVCWEKFARYFEVEL
Sbjct: 121 VGVGTVGSSEAIMLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVEL 180
Query: 179 KEVKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWD 238
KEVKL++G YVMDP KAVDMVDENTICVAAILGSTL GEFEDV+ LNDLL KN TGWD
Sbjct: 181 KEVKLTEGCYVMDPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWD 240
Query: 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPE 298
TPIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSGHKYGLVYAG+GW IWR+KEDLPE
Sbjct: 241 TPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPE 300
Query: 299 ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGL 358
ELIFHINYLGADQPTFTLNFSKGSSQ+IAQYYQ +RLGFEGYK++M+NC E+A L++GL
Sbjct: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGL 360
Query: 359 EKTGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLR 418
EKTGRF I+SK+ GVPLVAF+ KD A F +S LRR+GWIVPAYTMP +H+TVLR
Sbjct: 361 EKTGRFTIISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLR 420
Query: 419 VVIREDFSRTLAERLVLDVEKVLHELDALPXXXXXXXXXXXXXXXXXXXMEK------QR 472
VV+REDF R LAER + V L E+D E+ +
Sbjct: 421 VVVREDFGRPLAERFLSHVRMALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKS 480
Query: 473 EVISLWKRAVLAKKKTNGVC 492
E + + K L KT GVC
Sbjct: 481 EAVPVRKSVPLVAGKTKGVC 500
>Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin
C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1
protein)
Length = 331
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 4/75 (5%)
Query: 374 PLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERL 433
PLVAFSLKD + H+EFEI D LRRFGWIVPAYTMPPDA VLR VIRE+FSRTLAERL
Sbjct: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
Query: 434 VLDVEKVLHELDALP 448
VLD+EKV+ +LDALP
Sbjct: 211 VLDIEKVMCQLDALP 225
>Os01g0100900 Pyridoxal-dependent decarboxylase family protein
Length = 539
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 162/360 (45%), Gaps = 24/360 (6%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAV-GVGTVGSSEAIMLAGLAFKR 139
+ N + D + +L+ V M A L S + G T G +E+I+LA +
Sbjct: 155 HTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRD 214
Query: 140 RWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMDPAKAVDMV 199
+ K K KP ++ + ++K A+YF ++++ V ++ ++ D +
Sbjct: 215 YMRTK-----KGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNK-EFLADVKGFKRCI 268
Query: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTPIHVDAASGGFIAPFL---- 255
+ NTI + +G + ++ L +L ++ +D +HVD GGF+ PF
Sbjct: 269 NGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLGGFVLPFARKLG 322
Query: 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEELIFHINYLGADQPTFT 315
YP +DF + V SI+ HKYGL G ++++ E + + + G + T
Sbjct: 323 YPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPT 382
Query: 316 LNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEKTGRFNIVSKDNGVPL 375
+ S+ + + + LG GY + E + +++G+E ++ K + + +
Sbjct: 383 IAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGKPD-MTV 441
Query: 376 VAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQH--VTVLRVVIREDFSRTLAERL 433
VAF DS + FE++D + GW + A P++ H VT+ VI E+F + L + +
Sbjct: 442 VAFG-SDSV--DIFEVNDIMSSKGWHLNALQR-PNSLHICVTLQHTVIYEEFLKDLKDSV 497
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,853,726
Number of extensions: 653164
Number of successful extensions: 1155
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 7
Length of query: 492
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 387
Effective length of database: 11,553,331
Effective search space: 4471139097
Effective search space used: 4471139097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)