BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0655100 Os03g0655100|J075140P15
(109 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0655100 Protein of unknown function DUF1637 family pro... 229 4e-61
Os08g0133700 Protein of unknown function DUF1637 family pro... 80 3e-16
Os12g0623600 Protein of unknown function DUF1637 family pro... 79 5e-16
Os08g0133000 Protein of unknown function DUF1637 family pro... 79 8e-16
Os03g0654700 Protein of unknown function DUF1637 family pro... 76 5e-15
Os05g0592300 Protein of unknown function DUF1637 family pro... 70 2e-13
Os09g0316000 Protein of unknown function DUF1637 family pro... 69 7e-13
Os04g0151900 Protein of unknown function DUF1637 family pro... 68 2e-12
>Os03g0655100 Protein of unknown function DUF1637 family protein
Length = 109
Score = 229 bits (583), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 RADRNRRDSICSRNAQQTYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVF 60
RADRNRRDSICSRNAQQTYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVF
Sbjct: 1 RADRNRRDSICSRNAQQTYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVF 60
Query: 61 SKLLLGSLHIKSYDWAEPAVFAAGSGDRRKLSTLKCYSSPSKFSKFASE 109
SKLLLGSLHIKSYDWAEPAVFAAGSGDRRKLSTLKCYSSPSKFSKFASE
Sbjct: 61 SKLLLGSLHIKSYDWAEPAVFAAGSGDRRKLSTLKCYSSPSKFSKFASE 109
>Os08g0133700 Protein of unknown function DUF1637 family protein
Length = 205
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 12 SRNAQQ-TYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHI 70
+R AQ TY E D F I IF LP +AVIPLH+HPGMTV SKLL GS+H+
Sbjct: 93 ARWAQPITYLHVYECDAF--------SIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHV 144
Query: 71 KSYDWAEPAVFAAGSGDR-RKLSTLKCYSSPSKFSKFAS 108
KSYDW EPAV A+G + KL T ++P + F+
Sbjct: 145 KSYDWVEPAVLASGKPVKLGKLHTDDVLNAPCPTAVFSG 183
>Os12g0623600 Protein of unknown function DUF1637 family protein
Length = 298
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 38 IVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWA--EPAVF-AAGSGDRRKLS 92
++IFFLP A+IPLH+HPGMTVFSKLL+GSLHI+SYDW EPA+ ++ SGD+ +L+
Sbjct: 131 MIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSYDWVDPEPALSCSSSSGDQLRLA 188
>Os08g0133000 Protein of unknown function DUF1637 family protein
Length = 270
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 48/74 (64%), Gaps = 9/74 (12%)
Query: 12 SRNAQQ-TYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHI 70
+R AQ TY E D F I IF LP +AVIPLH+HPGMTV SKLL GS+H+
Sbjct: 93 ARWAQPITYLHVYECDAF--------SIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHV 144
Query: 71 KSYDWAEPAVFAAG 84
KSYDW EPAV A G
Sbjct: 145 KSYDWVEPAVLANG 158
>Os03g0654700 Protein of unknown function DUF1637 family protein
Length = 360
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 6 RRDSICSRNAQQTYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLL 65
RRD I Y E D F V V F+LP V+PLH+HPGMTVFSKLL
Sbjct: 172 RRDPIQVIGGNYLY----ECDNFTVAV--------FYLPAGTVMPLHDHPGMTVFSKLLA 219
Query: 66 GSLHIKSYDWAEPAVFAAGSGDRRKL 91
GS+H++S+DW P+V+ GSG +R +
Sbjct: 220 GSVHVQSFDWVSPSVY--GSGGKRAV 243
>Os05g0592300 Protein of unknown function DUF1637 family protein
Length = 274
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 35/40 (87%)
Query: 40 IFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAEPA 79
IF LP +AVIPLHNHPGMTVF K+L GS+H+KSYDWA+ A
Sbjct: 125 IFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSYDWAKSA 164
>Os09g0316000 Protein of unknown function DUF1637 family protein
Length = 105
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 37 QIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAE 77
QI IF +P +++IPLHNHPGMTVFSKLL G++H+KSYDW E
Sbjct: 13 QIGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVE 53
>Os04g0151900 Protein of unknown function DUF1637 family protein
Length = 249
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 14/72 (19%)
Query: 12 SRNAQQTYTEP------SETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLL 65
RN +T P E+++F + IF +PP++VIPLHNHPGMTV SKLL
Sbjct: 65 GRNGANQFTSPIKYLHIHESESFSMG--------IFCMPPSSVIPLHNHPGMTVLSKLLY 116
Query: 66 GSLHIKSYDWAE 77
G+LH +SYDW +
Sbjct: 117 GTLHAESYDWID 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,060,824
Number of extensions: 149216
Number of successful extensions: 261
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 8
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)