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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0654700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0359) R2 : 0.132
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.7 (0.676) R2dE : 0.132 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0197 (0.0756) R2dN8 : 0.00019 R2N8 : -8.03e-05
σ : 0.676
deviance : 209.35
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_____
C
peak time of C : --
E
wheather : wind
threshold : 8.761
memory length : 110
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.5
open length of G : 0.557

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.3 0.667 2.91 0.352 0.226 16.1 0.15 47.5 0.0401 8.71 9 10 13 1
205.31 0.672 2.87 0.198 0.226 5.74 0.15 -- 0.0405 8.7 8.79 108 13.5 0.536
205.38 0.667 2.91 0.341 0.226 16.2 -- 48.2 0.04 8.65 8.983 10 12.9 2.03
205.38 0.672 2.87 0.203 0.226 5.74 -- -- 0.0404 8.64 8.79 108 13.5 0.536
208.26 0.672 2.91 0.341 -- 16.2 -- 48 0.0422 -- 8.947 11 12.9 2.15
237.97 0.723 2.88 0.148 0.233 -- 0.11 -- 0.0195 9.37 -- -- -- --
238.01 0.722 2.88 0.152 0.232 -- -- -- 0.0197 9.42 -- -- -- --
208.26 0.675 2.88 0.203 -- 5.75 -- -- 0.0424 -- 8.761 110 13.5 0.557
206.46 0.673 2.88 -- 0.227 5.69 -- -- 0.0177 8.58 8.79 108 13.5 0.536
241.16 0.726 2.89 0.151 -- -- -- -- 0.0205 -- -- -- -- --
238.62 0.723 2.88 -- 0.232 -- -- -- 0.00273 9.37 -- -- -- --
209.35 0.676 2.89 -- -- 5.7 -- -- 0.0197 -- 8.761 110 13.5 0.557
241.76 0.726 2.89 -- -- -- -- -- 0.00374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.30 wind 9.0 10 > th dose independent rect. 13 1
13 205.30 wind 9.0 10 > th dose dependent rect. 13 1
66 217.44 radiation 10.0 30 < th dose independent rect. 8 7
73 218.60 radiation 10.0 10 < th dose independent rect. 14 1
77 219.21 wind 1.0 90 < th dose dependent rect. 2 2
85 221.22 wind 1.0 90 < th dose independent rect. 2 2
108 222.90 wind 1.0 90 < th dose dependent rect. 8 20
152 224.10 radiation 40.0 10 > th dose independent rect. 12 1
165 224.58 radiation 30.0 10 > th dose dependent rect. 12 1
168 224.70 wind 9.0 270 > th dose dependent rect. 18 20
247 225.98 atmosphere 1005.0 30 > th dose independent rect. 12 1
248 225.98 wind 1.0 90 > th dose independent rect. 13 23
262 226.23 radiation 10.0 10 < th dose dependent rect. 14 1
264 226.25 humidity 60.0 30 > th dose independent rect. 12 1
274 226.34 temperature 10.0 1440 > th dose independent rect. 13 1
278 226.34 atmosphere 995.0 1440 > th dose independent rect. 13 1
282 226.34 temperature 10.0 1440 > th dose independent rect. 14 23
285 226.35 radiation 10.0 10 < th dose dependent rect. 9 6
287 226.41 wind 1.0 90 < th dose independent rect. 8 20
294 226.47 humidity 50.0 30 > th dose dependent rect. 12 1
301 226.58 atmosphere 1010.0 30 < th dose independent rect. 12 1
334 226.69 temperature 30.0 30 < th dose independent rect. 12 1
335 226.70 wind 7.0 30 < th dose independent rect. 12 1
351 226.85 atmosphere 995.0 30 > th dose dependent rect. 12 1
353 226.86 humidity 80.0 30 < th dose independent rect. 12 1
365 226.90 radiation 10.0 30 > th dose independent rect. 12 1
381 227.00 temperature 10.0 30 > th dose independent rect. 12 1
383 227.00 atmosphere 995.0 30 > th dose independent rect. 12 1
386 227.00 precipitation 0.1 30 < th dose independent rect. 12 1
387 227.00 temperature 10.0 30 > th dose independent rect. 13 23
388 227.00 precipitation 0.1 30 < th dose dependent rect. 12 1
390 227.01 wind 1.0 90 < th dose dependent sin 13 NA
395 227.08 temperature 10.0 30 > th dose dependent rect. 12 1
413 227.25 radiation 10.0 30 < th dose independent rect. 21 18
417 227.29 radiation 10.0 30 < th dose independent rect. 18 21
422 227.32 radiation 10.0 30 < th dose independent rect. 16 23
423 227.34 wind 9.0 270 > th dose dependent sin 6 NA
426 227.35 radiation 10.0 30 < th dose independent rect. 6 23
431 227.38 radiation 10.0 30 < th dose independent rect. 8 20
432 227.38 wind 9.0 30 < th dose independent rect. 13 23
434 227.39 radiation 10.0 30 < th dose independent rect. 13 22
458 227.57 wind 1.0 90 < th dose dependent rect. 2 8
475 227.73 wind 9.0 30 < th dose dependent rect. 12 1
488 227.80 atmosphere 1015.0 30 < th dose dependent rect. 12 1
495 227.90 radiation 10.0 30 < th dose independent rect. 8 2
507 228.03 radiation 10.0 30 > th dose independent rect. 13 23
534 228.24 humidity 90.0 30 < th dose dependent rect. 12 1
547 228.32 radiation 10.0 30 < th dose independent no NA NA
565 228.44 wind 9.0 270 > th dose independent sin 6 NA
584 228.57 precipitation 0.1 10 > th dose independent rect. 17 1
614 228.57 precipitation 0.1 10 > th dose dependent rect. 17 1
642 228.59 wind 9.0 270 < th dose independent sin 6 NA
674 228.76 wind 1.0 90 < th dose independent rect. 8 1
708 228.91 humidity 90.0 10 > th dose independent rect. 17 1
719 228.91 humidity 90.0 10 > th dose dependent rect. 17 1
750 229.00 radiation 10.0 30 < th dose independent rect. 2 13
769 229.08 wind 1.0 90 < th dose dependent rect. 2 21
787 229.11 wind 1.0 90 < th dose dependent rect. 2 23
878 229.39 wind 1.0 90 < th dose independent rect. 2 8
885 229.41 wind 1.0 90 < th dose dependent no NA NA
932 229.68 precipitation 0.1 90 > th dose independent rect. 5 1
936 229.68 precipitation 0.1 90 > th dose dependent rect. 5 1
958 229.80 wind 1.0 90 < th dose independent sin 11 NA
983 229.91 radiation 10.0 30 < th dose independent rect. 21 23
999 229.99 wind 1.0 90 < th dose independent rect. 23 11