BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0654700 Os03g0654700|AK107417
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 163 1e-40
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 153 2e-37
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 145 3e-35
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 121 6e-28
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 117 9e-27
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 136/256 (53%), Gaps = 18/256 (7%)
Query: 112 LQRLVDECRVLLDGSSKSTQPPNSTTVSRIVALLNGIGPDDLKLGTVLDTSE----VTRA 167
+Q L D C+ G + S P S + ++ ++L+ + P D+ L V + V+
Sbjct: 35 VQELYDLCKETFTGKAPS---PASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVSGV 91
Query: 168 AAFRR----RDPIQVIGGNYLYECDNFTVAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVH 223
+ F R PI + ++ECD FT+ +F P +V+PLHDHP M VFSK+L GS+H
Sbjct: 92 SRFNRVGRWAQPITFLD---IHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYGSLH 148
Query: 224 VQSFDWVSPSVYGSGGKRAVHSKNTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAGV 283
V+++DWV P + K S +L K V D V+ LYP TGGNLH F A
Sbjct: 149 VKAYDWVEPPCIITQDKGVPGSLPARLAKLVSDKVITPQSEIPALYPKTGGNLHCFTALT 208
Query: 284 DGPCAFLDVLTPPYSEGRLRRCTFYRDYPFQLHRNHRFARNLSAQEKSQFAWLRPINASA 343
PCA LD+L+PPY E R C++Y DYPF + + ++ ++AWL I+
Sbjct: 209 --PCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQID--T 264
Query: 344 PPDLRIVPLTYSGPPV 359
P DL + P +Y+GP +
Sbjct: 265 PDDLHMRPGSYTGPTI 280
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 28/252 (11%)
Query: 112 LQRLVDECR-VLLDGSSKSTQPPNSTTVSRIVALLNGIGPDDLKLGTVLDTSEVTRAAAF 170
+Q+L D C+ V DG KS P+ + + A+L+ I P+D+ + + T
Sbjct: 47 VQKLFDTCKKVFADG--KSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYFRSTVTG-- 102
Query: 171 RRRDPIQVIGGNYLYECDNFTVAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVHVQSFDWV 230
R P+ + ++Y C F++ +F LP V+PLH+HP MTVFSKLL G++H++S+DWV
Sbjct: 103 --RSPL--VTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGTMHIKSYDWV 158
Query: 231 SPSVYGSGGKRAVHSKNTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAGVDGPCAFL 290
S S +T+L K +D A C T +LYP+ GGN+H F A CA L
Sbjct: 159 PDS--------PQPSSDTRLAKVKVDSDFTAPCDTSILYPADGGNMHCFTAKT--ACAVL 208
Query: 291 DVLTPPYSEGRLRRCTFYRDYPFQLHRNHRFARN---LSAQEKSQFAWLRPINASAPPDL 347
DV+ PPYS+ R CT+Y DYPF F+ + ++ +EK +AWL+ P DL
Sbjct: 209 DVIGPPYSDPAGRHCTYYFDYPFS-----SFSVDGVVVAEEEKEGYAWLKE-REEKPEDL 262
Query: 348 RIVPLTYSGPPV 359
+ L YSGP +
Sbjct: 263 TVTALMYSGPTI 274
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 111 ALQRLVDECRVLLDGSSKSTQPPNSTTVSRIVALLNGIGPDDLKLGTVLDTSEVTRAAAF 170
A++RL + C+ + P + + ++ +L+ + P+D+ L +
Sbjct: 57 AVRRLFNTCKEVFSNGGPGVIP-SEDKIQQLREILDDMKPEDVGLTPTMPYFRPNSGVEA 115
Query: 171 RRRDPIQVIGGNYLYECDNFTVAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVHVQSFDWV 230
R PI + +L++CD F++ +F LP V+PLH+HPGMTVFSKLL G++H++S+DWV
Sbjct: 116 RSSPPITYL---HLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWV 172
Query: 231 SPSVYGSGGKRAVHSKNTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAGVDGPCAFL 290
+ + T+L K +D A C +LYP GGN+HRF A CA L
Sbjct: 173 VDA--------PMRDSKTRLAKLKVDSTFTAPCNASILYPEDGGNMHRFTAIT--ACAVL 222
Query: 291 DVLTPPYSEGRLRRCTFYRDYPFQLHRNHRFARNLSAQEKSQFAWLRPINASAPPDLRIV 350
DVL PPY R CT++ ++P + S +EK +AWL+ + + +V
Sbjct: 223 DVLGPPYCNPEGRHCTYFLEFPLDKLSSEDDDVLSSEEEKEGYAWLQERDDNPEDHTNVV 282
Query: 351 PLTYSGPPV 359
Y GP V
Sbjct: 283 GALYRGPKV 291
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 123/260 (47%), Gaps = 42/260 (16%)
Query: 113 QRLVDECRVLLDGSSKSTQPPNSTTVSRIVALLNGIGPDDLKLGTVLDTSEVTRAAAFRR 172
QRL + C+ S S P + ++ +L I P D+ + E A R
Sbjct: 6 QRLYNTCK----ASFSSDGPITEDALEKVRNVLEKIKPSDVGI-------EQDAQLARSR 54
Query: 173 RDPIQVIGGN----------YLYECDNFTVAVFYLPAGTVMPLHDHPGMTVFSKLLAGSV 222
P+ G+ +L+ECD+F++ +F +P +++PLH+HPGMTV SKL+ GS+
Sbjct: 55 SGPLNERNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSM 114
Query: 223 HVQSFDWVSPSVYGSGGKRAVHSKNTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAG 282
HV+S+DW+ P + S+ + K V D + A LYP +GGN+H F A
Sbjct: 115 HVKSYDWLEPQLTEPEDP----SQEARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCFKAI 170
Query: 283 VDGPCAFLDVLTPPYSEGRLRRCTFYR-----DYPFQLHRNHRFARNLSAQEKSQFAWLR 337
CA LD+L PPYS R CT++R D P +L + +++ E+ Q
Sbjct: 171 TH--CAILDILAPPYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQ----- 223
Query: 338 PINASAPPDLRIVPLTYSGP 357
P D I + Y GP
Sbjct: 224 -----PPDDFVIRRIPYRGP 238
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 14/205 (6%)
Query: 112 LQRLVDECRVLLDGSSKSTQPPNSTTVSRIVALLNGIGPDDLKLGTVLDTSEVTRAAAFR 171
+QRL + C+ S P + + ++ +L I P D+ L
Sbjct: 5 IQRLFNTCK----SSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNE 60
Query: 172 R---RDPIQVIGGNYLYECDNFTVAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVHVQSFD 228
R + I L+ECD+F++ +F +P G+++PLH+HPGMTV SKL+ GS+HV+S+D
Sbjct: 61 RNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYD 120
Query: 229 WVSPSVYGSGGKRAVHSKNTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAGVDGPCA 288
W P S + ++ KLVK + D + T LYP+TGGN+H F A CA
Sbjct: 121 WAEPD--QSELDDPLQARPAKLVKDI-DMTSPSPATT--LYPTTGGNIHCFKAITH--CA 173
Query: 289 FLDVLTPPYSEGRLRRCTFYRDYPF 313
D+L+PPYS R C ++R P
Sbjct: 174 IFDILSPPYSSTHGRHCNYFRKSPM 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,313,008
Number of extensions: 289800
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 5
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)