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Os12g0623600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.0392) R2 : 0.638
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.3 (0.119) R2dC : 0.415 R2C : -0.237
β3 : -2.32 (0.0844) R2dE : 0.853 R2E : 0.205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.291 (0.0827) R2dN8 : 0.0127 R2N8 : 0.0215
σ : 0.736
deviance : 249.77
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C
peak time of C : 15.9
E
wheather : temperature
threshold : 20.4
memory length : 40
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 13.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.15 0.725 9.95 0.413 2.43 -2.51 1.87 -1.02 -0.25 15.6 20.43 40 5 13.7
241.15 0.723 9.94 0.455 2.38 -2.44 0.972 -- -0.23 15.7 20.5 40 5.02 13.7
243.54 0.727 9.94 0.473 2.36 -2.41 -- -0.188 -0.223 15.8 20.6 39 5.02 13.8
243.63 0.727 9.94 0.487 2.32 -2.36 -- -- -0.229 15.9 20.47 40 5.03 13.7
429.41 0.97 9.96 0.301 -- -1.46 -- 0.224 -0.426 -- 20.6 39 5.02 13.8
407.17 0.946 10 0.154 2.16 -- 0.609 -- -0.434 20.7 -- -- -- --
408.39 0.946 10 0.134 2.16 -- -- -- -0.434 20.7 -- -- -- --
429.75 0.97 9.96 0.289 -- -1.46 -- -- -0.43 -- 20.47 40 5.03 13.7
249.77 0.736 9.95 -- 2.3 -2.32 -- -- -0.291 15.9 20.4 40 5.03 13.7
672.18 1.21 9.97 0.129 -- -- -- -- -0.453 -- -- -- -- --
408.86 0.946 10 -- 2.16 -- -- -- -0.449 20.7 -- -- -- --
431.94 0.971 9.97 -- -- -1.45 -- -- -0.462 -- 20.47 40 5.03 13.7
672.62 1.21 9.97 -- -- -- -- -- -0.467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.34 temperature 20.0 30 > th dose independent rect. 5 14
2 261.47 temperature 10.0 30 > th dose dependent rect. 5 14
4 270.83 radiation 1.0 90 < th dose dependent rect. 17 22
6 271.31 radiation 1.0 90 < th dose dependent rect. 17 20
16 273.90 radiation 1.0 30 > th dose independent sin 12 NA
28 276.34 radiation 1.0 90 < th dose dependent rect. 17 12
33 277.99 radiation 1.0 30 > th dose independent rect. 16 15
36 279.40 radiation 1.0 90 < th dose dependent rect. 15 23
38 279.48 radiation 1.0 90 < th dose dependent rect. 21 23
39 279.88 radiation 1.0 90 < th dose dependent rect. 13 23
41 280.25 radiation 1.0 90 < th dose dependent rect. 6 23
42 280.29 radiation 1.0 90 < th dose dependent no NA NA
44 280.32 radiation 1.0 90 < th dose dependent rect. 9 23
48 280.49 radiation 1.0 90 < th dose dependent sin 12 NA
85 282.18 temperature 20.0 90 > th dose independent rect. 5 2
87 282.32 temperature 30.0 30 < th dose independent rect. 18 11
96 283.10 radiation 1.0 90 < th dose independent sin 12 NA
97 283.15 radiation 1.0 90 < th dose independent rect. 17 12
99 283.22 humidity 60.0 90 > th dose independent rect. 18 11
117 284.91 precipitation 0.1 30 < th dose independent rect. 5 14
118 284.91 precipitation 0.1 30 < th dose dependent rect. 5 14
131 286.55 radiation 1.0 30 < th dose independent rect. 19 21
133 286.67 temperature 20.0 90 > th dose dependent rect. 5 1
137 287.12 radiation 1.0 30 < th dose independent rect. 19 19
146 288.17 radiation 1.0 30 < th dose independent rect. 19 17
150 288.78 wind 9.0 30 < th dose independent rect. 19 10
151 288.78 temperature 10.0 30 > th dose independent rect. 19 10
155 288.78 atmosphere 995.0 30 > th dose independent rect. 19 10
161 288.78 temperature 10.0 30 > th dose independent rect. 5 14
163 288.78 atmosphere 1015.0 30 < th dose independent rect. 5 14
164 288.79 radiation 40.0 30 < th dose dependent rect. 19 10
177 289.61 wind 9.0 30 < th dose independent rect. 5 14
192 292.64 radiation 1.0 90 < th dose independent rect. 7 22
224 294.35 radiation 1.0 90 < th dose independent rect. 13 16
226 294.45 radiation 1.0 90 < th dose independent rect. 15 14
254 295.76 radiation 1.0 10 > th dose independent rect. 5 2
309 296.94 wind 3.0 90 < th dose dependent rect. 5 2
312 297.18 precipitation 0.1 30 < th dose independent rect. 19 10
313 297.18 precipitation 0.1 30 < th dose dependent rect. 19 10
343 298.00 atmosphere 995.0 30 > th dose independent rect. 5 14
366 300.36 humidity 80.0 90 > th dose independent rect. 5 2
390 301.46 radiation 10.0 90 < th dose independent rect. 5 2
394 301.79 humidity 60.0 90 > th dose dependent rect. 5 2
395 301.90 humidity 50.0 90 > th dose independent rect. 7 22
460 303.04 humidity 50.0 30 > th dose dependent rect. 18 11
473 303.62 atmosphere 1000.0 90 > th dose independent rect. 5 2
486 303.99 wind 3.0 90 < th dose independent rect. 5 2
488 304.09 atmosphere 1010.0 90 < th dose independent rect. 5 2
505 304.57 precipitation 0.1 90 < th dose independent rect. 5 2
506 304.57 precipitation 0.1 90 < th dose dependent rect. 5 2
513 304.77 wind 7.0 90 < th dose independent rect. 5 2
515 304.77 temperature 10.0 90 > th dose independent rect. 5 2
517 304.77 temperature 30.0 90 < th dose independent rect. 5 2
518 304.77 humidity 50.0 90 > th dose independent rect. 5 2
523 304.77 temperature 10.0 90 > th dose independent rect. 7 22
524 304.78 radiation 40.0 90 < th dose dependent rect. 5 2
570 306.45 radiation 1.0 90 < th dose independent rect. 15 23
573 306.57 wind 9.0 90 < th dose independent rect. 7 22
581 306.87 radiation 1.0 90 < th dose independent rect. 13 23
585 307.07 radiation 1.0 90 < th dose independent rect. 21 23
586 307.09 radiation 1.0 90 < th dose independent no NA NA
597 307.36 radiation 1.0 90 > th dose independent no NA NA
598 307.36 radiation 1.0 90 > th dose independent rect. 4 15
645 307.42 radiation 10.0 10 < th dose independent rect. 5 3
651 307.48 atmosphere 995.0 30 > th dose dependent rect. 19 10
689 308.15 atmosphere 995.0 90 > th dose independent rect. 7 22
736 309.54 radiation 1.0 10 > th dose dependent rect. 16 15
739 309.61 radiation 10.0 720 < th dose dependent rect. 17 2
760 310.36 temperature 15.0 30 > th dose dependent rect. 5 17
806 311.77 radiation 10.0 90 < th dose independent rect. 5 4
810 311.95 radiation 1.0 10 > th dose dependent rect. 18 13
815 312.31 wind 3.0 30 < th dose independent rect. 5 4
896 313.08 radiation 1.0 10 > th dose dependent rect. 5 2
908 313.09 wind 9.0 30 < th dose dependent rect. 5 14
913 313.28 atmosphere 1015.0 30 < th dose independent rect. 19 10
915 313.30 atmosphere 1015.0 90 < th dose dependent rect. 5 2
916 313.36 temperature 30.0 90 < th dose independent rect. 7 22
925 313.44 precipitation 0.1 90 < th dose independent rect. 7 22
926 313.44 precipitation 0.1 90 < th dose dependent rect. 7 22
927 313.50 wind 1.0 90 > th dose independent rect. 18 11
932 313.69 temperature 15.0 30 > th dose dependent rect. 5 19
945 314.22 atmosphere 995.0 90 > th dose dependent rect. 5 2
949 314.33 wind 3.0 30 < th dose dependent rect. 5 4
954 314.48 radiation 40.0 270 < th dose dependent rect. 15 12
962 314.86 wind 9.0 30 < th dose dependent rect. 19 10
989 315.23 temperature 30.0 720 < th dose independent rect. 17 2
999 315.42 radiation 1.0 90 > th dose independent rect. 9 23