BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0623600 Os12g0623600|AK099628
(298 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 203 8e-53
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 196 1e-50
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 186 1e-47
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 169 1e-42
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 164 5e-41
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 16/243 (6%)
Query: 58 PLQRLFRACRAVFR--GTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARDDDEGI 115
P+Q+LF C+ VF +GTVP+ +++L ++LD++KPEDVG+ +F +
Sbjct: 46 PVQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYFRSTVTGRS- 104
Query: 116 PLIKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSYDWVDPEPAL 175
PL+ +Y C F++ IF LP + +IPLH+HP MTVFSKLL G++HI+SYDWV P
Sbjct: 105 PLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGTMHIKSYDWVPDSPQP 164
Query: 176 SCSSSSGDQLRLAKRVVNGVFTAPCDTSVLYPTTGGNMHRFRAIAPCAILDILGPPYSTE 235
S + RLAK V+ FTAPCDTS+LYP GGNMH F A CA+LD++GPPYS
Sbjct: 165 SSDT------RLAKVKVDSDFTAPCDTSILYPADGGNMHCFTAKTACAVLDVIGPPYSDP 218
Query: 236 DGRDCTYYRAIPYSRHSVKNGAADQLTGVDEEGHRLSWLT--ETIPRMLRMRQIRYGGPP 293
GR CTYY P+S SV D + +EE +WL E P L + + Y GP
Sbjct: 219 AGRHCTYYFDYPFSSFSV-----DGVVVAEEEKEGYAWLKEREEKPEDLTVTALMYSGPT 273
Query: 294 ISD 296
I +
Sbjct: 274 IKE 276
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 134/222 (60%), Gaps = 13/222 (5%)
Query: 59 LQRLFRACRAVFR--GTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARDDDEG-- 114
++RLF C+ VF G G +P+ ++ L +LD MKPEDVGL +F E
Sbjct: 58 VRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGLTPTMPYFRPNSGVEARS 117
Query: 115 IPLIKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSYDWVDPEPA 174
P I L++CD F++ IF LP + +IPLH+HPGMTVFSKLL G++HI+SYDWV P
Sbjct: 118 SPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDAPM 177
Query: 175 LSCSSSSGDQLRLAKRVVNGVFTAPCDTSVLYPTTGGNMHRFRAIAPCAILDILGPPYST 234
+ RLAK V+ FTAPC+ S+LYP GGNMHRF AI CA+LD+LGPPY
Sbjct: 178 RDSKT------RLAKLKVDSTFTAPCNASILYPEDGGNMHRFTAITACAVLDVLGPPYCN 231
Query: 235 EDGRDCTYYRAIPYSRHSVKNGAADQLTGVDEEGHRLSWLTE 276
+GR CTY+ P + S ++ D + +EE +WL E
Sbjct: 232 PEGRHCTYFLEFPLDKLSSED---DDVLSSEEEKEGYAWLQE 270
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 140/260 (53%), Gaps = 26/260 (10%)
Query: 53 QAEASPLQRLFRACRAVFRGTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARDDD 112
Q ++ +Q L+ C+ F G PA + LCS+LD + P DVGL ++DDD
Sbjct: 29 QEKSPKVQELYDLCKETFTGKAPSPASMAIQKLCSVLDSVSPADVGLEE-----VSQDDD 83
Query: 113 EGIPL---------------IKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLL 157
G + I ++ECD FTM IF P +++IPLHDHP M VFSK+L
Sbjct: 84 RGYGVSGVSRFNRVGRWAQPITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKIL 143
Query: 158 IGSLHIRSYDWVDPEPALSCSSSSGDQL--RLAKRVVNGVFTAPCDTSVLYPTTGGNMHR 215
GSLH+++YDWV+P ++ L RLAK V + V T + LYP TGGN+H
Sbjct: 144 YGSLHVKAYDWVEPPCIITQDKGVPGSLPARLAKLVSDKVITPQSEIPALYPKTGGNLHC 203
Query: 216 FRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQLTGVDEEGHRLSWLT 275
F A+ PCA+LDIL PPY GR C+YY P+S +++NG G ++E +WL
Sbjct: 204 FTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDE---YAWLV 260
Query: 276 ET-IPRMLRMRQIRYGGPPI 294
+ P L MR Y GP I
Sbjct: 261 QIDTPDDLHMRPGSYTGPTI 280
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 140/244 (57%), Gaps = 18/244 (7%)
Query: 60 QRLFRACRAVFRGTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARD--------D 111
QRL+ C+A F G + ++ + ++L+K+KP DVG+ D + +R
Sbjct: 6 QRLYNTCKASFSSDGPI-TEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNERNGS 64
Query: 112 DEGIPLIKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSYDWVDP 171
++ P IK L+ECD+F++ IF +P +++IPLH+HPGMTV SKL+ GS+H++SYDW+
Sbjct: 65 NQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYDWL-- 122
Query: 172 EPALSCSSSSGDQLRLAKRVVNGVFTAPCDTSVLYPTTGGNMHRFRAIAPCAILDILGPP 231
EP L+ + R AK V + TA + LYP +GGN+H F+AI CAILDIL PP
Sbjct: 123 EPQLTEPEDPSQEARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCFKAITHCAILDILAPP 182
Query: 232 YSTEDGRDCTYYRAIPYSRHSVKNGAADQLTGVDEEGHRLSWLTE-TIPRMLRMRQIRYG 290
YS+E R CTY+R S + +L E ++WL E P +R+I Y
Sbjct: 183 YSSEHDRHCTYFRK------SRREDLPGELEVDGEVVTDVTWLEEFQPPDDFVIRRIPYR 236
Query: 291 GPPI 294
GP I
Sbjct: 237 GPVI 240
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 138/247 (55%), Gaps = 22/247 (8%)
Query: 59 LQRLFRACRAVFRGTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFF--------TARD 110
+QRLF C++ G V + +D + ++L+K+KP DVGL + +
Sbjct: 5 IQRLFNTCKSSLSPNGPV-SEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNERNG 63
Query: 111 DDEGIPLIKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSYDWVD 170
+ +P IK L+ECD+F++ IF +P +IIPLH+HPGMTV SKL+ GS+H++SYDW +
Sbjct: 64 NHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYDWAE 123
Query: 171 PEPALSCSSSSGD--QLRLAKRVVNGVFTAPCDTSVLYPTTGGNMHRFRAIAPCAILDIL 228
P+ S D Q R AK V + T+P + LYPTTGGN+H F+AI CAI DIL
Sbjct: 124 PD-----QSELDDPLQARPAKLVKDIDMTSPSPATTLYPTTGGNIHCFKAITHCAIFDIL 178
Query: 229 GPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQLTGVDEEGHRLSWLTE-TIPRMLRMRQI 287
PPYS+ GR C Y+R P G + + G E ++WL E P + ++
Sbjct: 179 SPPYSSTHGRHCNYFRKSPMLDLP---GEIEVMNG--EVISNVTWLEEYQPPDNFVIWRV 233
Query: 288 RYGGPPI 294
Y GP I
Sbjct: 234 PYRGPVI 240
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,172,602
Number of extensions: 261446
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 5
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)