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Os08g0133000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0229) R2 : 0.797
β1 : 1.23 (0.0841) R2dD : 0.099 R2D : 0.0728
β2 : 2.37 (0.0607) R2dC : 0.708 R2C : 0.563
β3 : -0.858 (0.0486) R2dE : 0.15 R2E : -0.00716
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.025 (0.049) R2dN8 : 7.08e-05 R2N8 : -0.00231
σ : 0.428
deviance : 84.43
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_____
C
peak time of C : 19
E
wheather : temperature
threshold : 19.6
memory length : 13
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 18.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.85 0.433 11.9 1.25 2.35 -0.835 -0.199 0.318 -0.00369 19.1 19.86 11 5.02 18.9
85.39 0.43 11.9 1.23 2.37 -0.844 -0.175 -- 0.00493 19 19.9 11 5.02 18.9
84.93 0.429 11.9 1.24 2.34 -0.84 -- 0.3 0.00146 19 19.8 11 5.02 18.9
84.43 0.428 11.9 1.23 2.37 -0.858 -- -- -0.025 19 19.6 13 5.02 18.9
331.11 0.852 11.8 1.25 -- -0.744 -- 0.418 -0.0581 -- 19.94 10 3.75 19.1
116.73 0.507 11.9 1.06 2.19 -- -0.396 -- -0.0956 20.2 -- -- -- --
117.21 0.507 11.9 1.08 2.19 -- -- -- -0.0959 20.2 -- -- -- --
313.21 0.828 11.8 1.2 -- -0.937 -- -- -0.117 -- 18.4 99 1.33 19.3
124.85 0.52 11.9 -- 2.36 -0.799 -- -- -0.0376 19 19.55 15 5.03 18.8
382.38 0.914 11.8 1.06 -- -- -- -- -0.121 -- -- -- -- --
147.68 0.568 11.9 -- 2.19 -- -- -- -0.216 20.2 -- -- -- --
132.33 0.536 11.9 -- -- -2.21 -- -- -0.284 -- 14.8 460 0.117 8.47
411.92 0.947 11.9 -- -- -- -- -- -0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.46 temperature 20.0 10 > th dose dependent rect. 5 4
4 88.29 temperature 20.0 10 > th dose independent rect. 5 19
6 88.56 temperature 20.0 10 > th dose independent rect. 5 4
16 90.13 radiation 1.0 90 > th dose independent rect. 5 4
28 90.42 temperature 15.0 270 > th dose dependent rect. 4 3
35 90.86 atmosphere 995.0 270 > th dose dependent rect. 21 6
38 91.23 radiation 20.0 10 < th dose dependent sin 10 NA
43 91.51 wind 7.0 270 < th dose independent rect. 7 21
44 91.52 wind 7.0 270 < th dose independent rect. 8 19
46 91.69 temperature 15.0 270 > th dose dependent rect. 5 1
47 91.75 temperature 10.0 90 > th dose dependent rect. 19 14
57 92.02 wind 7.0 270 < th dose dependent rect. 4 3
85 92.58 atmosphere 995.0 10 > th dose dependent rect. 23 6
89 92.65 temperature 15.0 10 > th dose dependent rect. 20 13
90 92.69 radiation 1.0 90 < th dose independent sin 10 NA
97 92.85 wind 5.0 270 < th dose independent rect. 4 3
100 92.86 temperature 30.0 90 < th dose dependent rect. 23 6
101 92.92 wind 9.0 270 < th dose dependent rect. 8 19
102 92.95 radiation 1.0 90 > th dose independent sin 10 NA
106 92.99 wind 1.0 90 > th dose independent rect. 9 20
127 93.28 temperature 20.0 270 > th dose independent rect. 5 1
135 93.52 precipitation 0.1 270 < th dose independent rect. 4 3
136 93.52 precipitation 0.1 270 < th dose dependent rect. 4 3
138 93.54 wind 9.0 270 < th dose dependent rect. 3 5
139 93.55 precipitation 0.1 270 < th dose independent rect. 3 5
140 93.55 precipitation 0.1 270 < th dose dependent rect. 3 5
142 93.57 wind 5.0 270 < th dose independent rect. 3 5
146 93.60 wind 1.0 90 > th dose independent rect. 23 6
150 93.68 radiation 1.0 270 > th dose independent rect. 4 2
161 93.72 temperature 30.0 90 < th dose independent rect. 5 4
165 93.76 radiation 30.0 270 < th dose independent rect. 3 6
169 93.78 temperature 10.0 270 > th dose independent rect. 4 3
172 93.78 humidity 50.0 270 > th dose independent rect. 4 3
174 93.78 atmosphere 995.0 270 > th dose independent rect. 4 3
175 93.78 atmosphere 1015.0 270 < th dose independent rect. 4 3
176 93.78 radiation 40.0 270 < th dose independent rect. 4 3
177 93.78 temperature 10.0 270 > th dose independent rect. 7 21
192 94.04 temperature 10.0 270 > th dose independent rect. 3 5
194 94.04 temperature 30.0 270 < th dose independent rect. 3 5
195 94.04 humidity 50.0 270 > th dose independent rect. 3 5
197 94.04 atmosphere 995.0 270 > th dose independent rect. 3 5
198 94.04 atmosphere 1015.0 270 < th dose independent rect. 3 5
199 94.04 temperature 20.0 90 > th dose independent rect. 16 17
200 94.04 temperature 10.0 270 > th dose independent rect. 8 19
205 94.07 radiation 1.0 90 < th dose dependent rect. 23 12
217 94.10 atmosphere 1000.0 270 > th dose independent rect. 21 6
219 94.12 radiation 1.0 10 > th dose dependent rect. 18 15
220 94.13 radiation 1.0 10 > th dose dependent rect. 5 4
244 94.14 radiation 1.0 90 < th dose dependent rect. 23 9
248 94.18 wind 7.0 10 < th dose dependent rect. 5 4
251 94.21 temperature 20.0 90 > th dose independent rect. 19 14
289 94.46 precipitation 0.1 270 < th dose independent rect. 8 19
290 94.46 precipitation 0.1 270 < th dose dependent rect. 8 19
300 94.55 temperature 30.0 270 < th dose dependent rect. 21 6
306 94.61 wind 9.0 270 < th dose independent rect. 6 23
309 94.61 radiation 40.0 270 < th dose dependent rect. 3 6
311 94.62 temperature 30.0 10 < th dose independent rect. 5 5
319 94.65 radiation 40.0 270 < th dose dependent rect. 4 3
327 94.71 temperature 30.0 10 < th dose dependent rect. 23 7
328 94.72 wind 5.0 10 < th dose independent rect. 5 4
332 94.76 radiation 1.0 90 < th dose independent rect. 23 8
336 94.77 precipitation 0.1 270 < th dose independent rect. 7 21
337 94.77 precipitation 0.1 270 < th dose dependent rect. 7 21
340 94.81 atmosphere 1000.0 10 > th dose independent rect. 23 6
346 94.82 radiation 1.0 90 < th dose independent rect. 23 12
354 94.84 wind 9.0 10 < th dose independent rect. 9 20
355 94.85 radiation 40.0 10 < th dose independent rect. 5 5
360 94.86 temperature 10.0 270 > th dose dependent rect. 17 14
378 94.94 humidity 50.0 270 > th dose dependent rect. 4 3
383 94.97 wind 9.0 270 < th dose independent rect. 7 10
426 95.18 humidity 90.0 30 < th dose independent rect. 6 3
439 95.27 precipitation 0.1 10 < th dose independent rect. 5 4
441 95.27 precipitation 0.1 10 < th dose dependent rect. 5 4
477 95.37 temperature 10.0 10 > th dose independent rect. 5 4
480 95.37 humidity 50.0 10 > th dose independent rect. 5 4
482 95.37 atmosphere 995.0 10 > th dose independent rect. 5 4
483 95.37 atmosphere 1015.0 10 < th dose independent rect. 5 4
484 95.37 temperature 10.0 10 > th dose independent rect. 9 20
498 95.40 atmosphere 995.0 270 > th dose independent rect. 8 19
507 95.47 atmosphere 1015.0 270 < th dose independent rect. 3 18
515 95.51 atmosphere 1010.0 270 < th dose independent rect. 13 9
529 95.55 atmosphere 1015.0 270 < th dose dependent rect. 4 3
566 95.68 atmosphere 995.0 270 > th dose independent rect. 7 21
588 95.78 humidity 50.0 270 > th dose dependent rect. 3 5
608 95.86 wind 7.0 270 < th dose independent rect. 21 6
683 96.07 wind 9.0 270 < th dose dependent rect. 8 9
733 96.25 atmosphere 995.0 10 > th dose independent rect. 9 20
739 96.28 temperature 10.0 270 > th dose independent rect. 21 6
740 96.28 temperature 30.0 270 < th dose independent rect. 21 6
741 96.28 humidity 50.0 270 > th dose independent rect. 21 6
745 96.28 radiation 1.0 270 < th dose independent rect. 21 6
752 96.28 radiation 1.0 270 < th dose dependent rect. 21 6
760 96.32 precipitation 0.1 270 < th dose independent rect. 3 18
761 96.32 precipitation 0.1 270 < th dose dependent rect. 3 18
767 96.35 precipitation 0.1 10 < th dose independent rect. 9 20
769 96.35 precipitation 0.1 10 < th dose dependent rect. 9 20
790 96.44 temperature 10.0 270 > th dose independent rect. 7 10
791 96.44 atmosphere 1015.0 270 < th dose independent rect. 7 10
793 96.44 radiation 40.0 270 < th dose independent rect. 17 14
825 96.50 atmosphere 1015.0 10 < th dose dependent rect. 5 4
829 96.52 precipitation 0.1 270 < th dose independent rect. 21 6
833 96.52 precipitation 0.1 270 < th dose dependent rect. 21 6
840 96.53 humidity 50.0 270 > th dose independent rect. 17 14
841 96.53 atmosphere 1015.0 90 < th dose independent rect. 5 18
867 96.61 precipitation 0.1 270 < th dose independent rect. 17 14
869 96.61 precipitation 0.1 270 < th dose dependent rect. 17 14
886 96.65 precipitation 0.1 10 < th dose independent rect. 5 18
887 96.65 precipitation 0.1 10 < th dose dependent rect. 5 18
898 96.70 temperature 15.0 270 > th dose independent rect. 13 9
947 96.83 precipitation 0.1 270 < th dose independent rect. 7 10
949 96.83 precipitation 0.1 270 < th dose dependent rect. 7 10
977 96.89 wind 9.0 270 < th dose independent rect. 17 14
984 96.90 radiation 40.0 90 < th dose independent rect. 5 18