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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0655100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.78 (0.0518) R2 : 0.785
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.27 (0.16) R2dC : 1.02 R2C : 0.648
β3 : -2.08 (0.16) R2dE : 0.113 R2E : -0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.57 (0.109) R2dN8 : 0.0168 R2N8 : 0.0107
σ : 0.968
deviance : 432.08
__
_____
C
peak time of C : 6.62
E
wheather : temperature
threshold : 19.28
memory length : 265
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 19.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
426.42 0.97 6.8 0.157 6.11 -2.09 -1.04 -0.954 -0.592 6.61 19.3 216 20.2 20.3
427.9 0.963 6.8 0.283 6.17 -2.15 -1.13 -- -0.579 6.64 19.3 249 20.1 20
426.36 0.962 6.77 0.101 6.28 -2.12 -- -1.09 -0.544 6.61 19.3 261 20 19.7
430.74 0.967 6.77 0.224 6.24 -2.12 -- -- -0.549 6.62 19.3 262 20 19.7
1144.4 1.58 6.73 0.204 -- -3.63 -- 1.14 -0.314 -- 13.95 1067 20.7 21
565.85 1.12 6.86 -0.316 5.22 -- -1.54 -- -0.78 6.23 -- -- -- --
571.72 1.12 6.86 -0.334 5.21 -- -- -- -0.775 6.22 -- -- -- --
558.06 1.1 6.92 0.107 -- -4.59 -- -- -0.719 -- 14.9 639 4.82 16.6
432.08 0.968 6.78 -- 6.27 -2.08 -- -- -0.57 6.62 19.28 265 20 19.6
1980.14 2.08 6.95 -0.191 -- -- -- -- -0.661 -- -- -- -- --
574.66 1.12 6.85 -- 5.21 -- -- -- -0.738 6.23 -- -- -- --
550.37 1.09 6.92 -- -- -4.81 -- -- -0.7 -- 14.9 620 4.95 16.6
1981.11 2.08 6.95 -- -- -- -- -- -0.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 438.70 temperature 20.0 270 > th dose independent rect. 20 20
3 445.33 temperature 10.0 270 > th dose dependent rect. 20 20
10 450.57 atmosphere 995.0 270 > th dose dependent rect. 16 4
11 450.91 temperature 30.0 90 < th dose dependent rect. 18 3
12 451.13 humidity 50.0 90 > th dose dependent rect. 18 3
13 451.33 humidity 60.0 10 > th dose dependent rect. 18 3
17 451.98 atmosphere 1005.0 270 > th dose independent rect. 16 4
19 452.39 temperature 30.0 270 < th dose dependent rect. 16 4
23 453.51 temperature 30.0 270 < th dose independent rect. 16 4
29 455.14 temperature 30.0 10 < th dose dependent rect. 18 3
33 456.88 radiation 1.0 270 < th dose dependent rect. 17 2
34 457.10 temperature 10.0 270 > th dose dependent rect. 9 16
56 460.21 radiation 1.0 270 < th dose independent rect. 17 2
60 460.78 humidity 70.0 90 > th dose independent rect. 18 3
63 460.91 humidity 50.0 14400 > th dose independent rect. 19 3
65 461.40 temperature 30.0 90 < th dose independent rect. 18 3
66 461.43 temperature 20.0 270 > th dose independent rect. 20 6
72 462.49 radiation 20.0 270 < th dose dependent rect. 16 4
79 463.18 humidity 50.0 270 > th dose independent rect. 16 4
82 463.31 temperature 20.0 270 > th dose independent rect. 10 15
91 463.93 radiation 1.0 90 < th dose independent rect. 17 4
94 464.16 atmosphere 995.0 270 > th dose dependent rect. 15 6
96 464.36 temperature 20.0 90 > th dose independent rect. 12 15
111 465.36 radiation 20.0 270 < th dose independent rect. 16 4
120 466.01 temperature 20.0 10 > th dose independent rect. 12 16
141 467.69 temperature 20.0 270 > th dose independent rect. 6 20
178 469.40 humidity 70.0 10 > th dose independent rect. 18 3
191 470.10 temperature 10.0 270 > th dose dependent rect. 6 20
257 472.70 temperature 30.0 270 < th dose dependent rect. 1 20
286 473.56 wind 9.0 270 < th dose independent rect. 16 4
288 473.63 temperature 30.0 90 < th dose dependent rect. 3 20
294 473.97 temperature 10.0 270 > th dose independent rect. 16 4
295 473.97 atmosphere 1015.0 270 < th dose independent rect. 16 4
298 473.99 temperature 15.0 1440 > th dose independent rect. 19 3
303 474.20 wind 9.0 270 < th dose independent rect. 20 20
320 474.76 radiation 10.0 4320 < th dose dependent rect. 19 3
322 474.78 radiation 1.0 270 < th dose independent rect. 8 12
344 475.15 atmosphere 995.0 270 > th dose independent rect. 20 20
354 475.26 temperature 30.0 1440 < th dose independent rect. 19 3
358 475.26 humidity 50.0 1440 > th dose independent rect. 19 3
360 475.26 atmosphere 995.0 1440 > th dose independent rect. 19 3
361 475.26 radiation 1.0 1440 < th dose independent rect. 19 3
381 475.26 temperature 10.0 1440 > th dose independent rect. 22 21
437 476.69 wind 1.0 270 > th dose independent rect. 16 4
445 476.83 temperature 20.0 10 > th dose independent rect. 23 19
449 476.92 wind 9.0 270 < th dose dependent rect. 16 4
450 476.94 precipitation 0.1 90 < th dose independent rect. 21 21
451 476.94 precipitation 0.1 90 < th dose dependent rect. 21 21
462 477.13 atmosphere 1015.0 270 < th dose independent rect. 20 20
463 477.16 temperature 10.0 270 > th dose dependent rect. 6 10
484 477.76 temperature 10.0 90 > th dose independent rect. 18 3
487 477.76 atmosphere 1010.0 90 < th dose independent rect. 18 3
493 477.77 wind 9.0 90 < th dose independent rect. 18 3
518 478.30 atmosphere 1000.0 10 > th dose dependent rect. 18 4
556 479.50 wind 9.0 270 < th dose independent rect. 15 6
571 479.85 atmosphere 995.0 270 > th dose independent rect. 21 18
575 479.94 wind 9.0 270 < th dose independent rect. 21 18
580 480.00 temperature 10.0 270 > th dose independent rect. 15 6
590 480.23 wind 1.0 90 > th dose independent rect. 18 3
592 480.25 temperature 10.0 10 > th dose dependent rect. 12 15
605 480.40 temperature 15.0 270 > th dose dependent rect. 20 6
607 480.45 radiation 1.0 90 < th dose dependent sin 22 NA
614 480.61 wind 9.0 90 < th dose dependent rect. 18 3
615 480.63 humidity 50.0 14400 > th dose independent rect. 19 5
622 480.85 atmosphere 1015.0 270 < th dose independent rect. 21 18
623 480.87 atmosphere 1000.0 10 > th dose dependent rect. 19 2
703 482.59 temperature 10.0 43200 > th dose independent rect. 10 9
728 483.08 wind 1.0 270 > th dose independent rect. 15 6
761 483.62 temperature 20.0 270 > th dose independent rect. 23 1
763 483.77 precipitation 0.1 90 < th dose independent rect. 20 23
765 483.77 precipitation 0.1 90 < th dose dependent rect. 20 23
788 484.17 temperature 20.0 10 > th dose independent rect. 23 5
796 484.31 temperature 20.0 270 > th dose independent rect. 6 10
831 484.81 humidity 50.0 270 > th dose independent rect. 21 18
854 485.23 wind 9.0 90 < th dose independent rect. 19 1
856 485.25 temperature 10.0 90 > th dose independent rect. 19 1
862 485.25 atmosphere 1010.0 90 < th dose independent rect. 19 1
884 485.42 wind 1.0 90 > th dose independent rect. 19 1
895 485.62 temperature 20.0 1440 > th dose independent rect. 18 7
960 486.26 wind 9.0 90 < th dose independent rect. 20 23
991 486.78 temperature 20.0 1440 > th dose independent rect. 21 2
994 486.82 temperature 30.0 10 < th dose dependent rect. 4 18
997 486.84 temperature 30.0 90 < th dose dependent rect. 17 19
998 486.86 radiation 1.0 90 < th dose dependent rect. 4 17