BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0655100 Os03g0655100|J075140P15
(109 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 76 4e-15
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 73 3e-14
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 72 4e-14
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 72 6e-14
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 70 3e-13
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 35 QSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAEPAVFAAGSGDRRKLSTL 94
Q I IF LPP+ VIPLHNHPGMTVFSKLL G++HIKSYDW V A + +L+ L
Sbjct: 131 QFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW---VVDAPMRDSKTRLAKL 187
Query: 95 KCYSS 99
K S+
Sbjct: 188 KVDST 192
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 8/60 (13%)
Query: 19 YTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAEP 78
Y + E D+F I IF +PP ++IPLHNHPGMTV SKL+ GS+H+KSYDWAEP
Sbjct: 73 YLQLHECDSF--------SIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYDWAEP 124
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 14/83 (16%)
Query: 4 RNRRDSICSRNAQQT------YTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGM 57
R+R + RN Y E D+F I IF +PP+++IPLHNHPGM
Sbjct: 52 RSRSGPLNERNGSNQSPPAIKYLHLHECDSF--------SIGIFCMPPSSMIPLHNHPGM 103
Query: 58 TVFSKLLLGSLHIKSYDWAEPAV 80
TV SKL+ GS+H+KSYDW EP +
Sbjct: 104 TVLSKLVYGSMHVKSYDWLEPQL 126
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 7 RDSICSRNAQQTYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLG 66
R ++ R+ TY F +C IF LPP+ VIPLHNHP MTVFSKLL G
Sbjct: 97 RSTVTGRSPLVTYLHIYACHRFSIC--------IFCLPPSGVIPLHNHPEMTVFSKLLFG 148
Query: 67 SLHIKSYDWA 76
++HIKSYDW
Sbjct: 149 TMHIKSYDWV 158
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 18 TYTEPSETDTFCVCVPYQSQIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAE 77
T+ + E DTF +C IF P ++VIPLH+HP M VFSK+L GSLH+K+YDW E
Sbjct: 105 TFLDIHECDTFTMC--------IFCFPTSSVIPLHDHPEMAVFSKILYGSLHVKAYDWVE 156
Query: 78 P 78
P
Sbjct: 157 P 157
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,539,981
Number of extensions: 90705
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)