FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0316000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.38 (0.0476) R2 : 0.545
β1 : -1.31 (0.184) R2dD : 0.0814 R2D : -0.117
β2 : 1.88 (0.108) R2dC : 0.279 R2C : 0.254
β3 : 2.19 (0.165) R2dE : 0.29 R2E : -0.0297
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.35 (0.116) R2dN8 : 0.255 R2N8 : -0.0699
σ : 0.849
deviance : 332.59
__
_____
C
peak time of C : 24
E
wheather : temperature
threshold : 32.06
memory length : 21114
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.39 0.876 5.11 -0.27 1.76 2.62 -0.0361 5.25 -0.671 0.179 10.68 3449 -- --
345.91 0.866 5.32 -1.07 1.75 1.74 0.362 -- -1.1 0.0945 31.76 10919 -- --
347.39 0.868 5.11 -0.265 1.77 2.61 -- 5.25 -0.671 0.177 10.7 3431 -- --
332.59 0.849 5.38 -1.31 1.88 2.19 -- -- -1.35 24 32.06 21114 -- --
516.61 1.06 5.14 -0.422 -- 2.93 -- 4.32 -0.806 -- 6.499 2422 -- --
479.25 1.03 5.19 -0.432 1.92 -- 0.155 -- -0.511 0.132 -- -- -- --
479.36 1.03 5.19 -0.438 1.92 -- -- -- -0.511 0.131 -- -- -- --
511.03 1.05 5.23 -1.21 -- 2.42 -- -- -0.864 -- 23.7 2427 -- --
379.3 0.907 5.34 -- 1.84 1.88 -- -- -1.18 0.032 32.03 19030 -- --
711.71 1.25 5.15 -0.376 -- -- -- -- -0.483 -- -- -- -- --
484.41 1.03 5.18 -- 1.92 -- -- -- -0.463 0.118 -- -- -- --
545.84 1.09 5.19 -- -- 2.13 -- -- -0.667 -- 24 2437 -- --
715.44 1.25 5.14 -- -- -- -- -- -0.442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.46 temperature 30 43200 < th dose independent rect. 18 15
2 302.37 temperature 25 43200 > th dose dependent rect. 21 1
4 302.48 temperature 30 43200 < th dose independent rect. 18 13
5 302.57 temperature 30 43200 < th dose independent rect. 18 6
6 302.57 temperature 30 43200 < th dose independent rect. 18 10
8 302.61 temperature 30 43200 < th dose independent rect. 18 4
11 302.62 temperature 30 43200 < th dose independent rect. 18 2
27 303.68 temperature 30 43200 > th dose independent rect. 17 16
54 304.89 temperature 30 43200 > th dose independent rect. 18 1
96 305.52 temperature 30 43200 < th dose independent sin 11 NA
99 305.63 temperature 30 43200 > th dose independent sin 11 NA
119 305.93 temperature 30 43200 > th dose dependent rect. 17 16
134 306.04 temperature 25 43200 < th dose independent rect. 23 1
156 306.77 temperature 25 43200 > th dose independent rect. 22 2
161 306.86 temperature 30 43200 > th dose dependent rect. 12 22
180 306.92 temperature 30 43200 > th dose dependent sin 11 NA
184 306.95 temperature 30 43200 > th dose dependent rect. 12 1
187 307.00 temperature 30 43200 > th dose dependent rect. 12 7
205 307.03 temperature 30 43200 > th dose dependent rect. 12 3
247 307.32 temperature 30 43200 > th dose dependent rect. 17 22
273 307.39 temperature 30 43200 > th dose dependent no NA NA
275 307.39 temperature 30 43200 > th dose dependent rect. 8 11
633 308.88 temperature 25 43200 < th dose independent rect. 20 11
654 309.15 temperature 25 43200 > th dose independent rect. 20 11
702 309.52 temperature 25 43200 < th dose independent rect. 6 1
719 309.67 temperature 25 43200 > th dose independent rect. 6 1
756 309.89 temperature 30 43200 > th dose independent no NA NA
757 309.89 temperature 30 43200 > th dose independent rect. 8 11
885 310.16 temperature 30 43200 < th dose independent no NA NA
886 310.16 temperature 30 43200 < th dose independent rect. 8 11