BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0316000 Os09g0316000|J075062M10
(105 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 80 2e-16
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 77 1e-15
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 77 2e-15
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 75 5e-15
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 70 2e-13
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 8/65 (12%)
Query: 11 CMQ--IGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVEDT------TQLLKLS 62
C Q IGIFC+P S +IPLHNHPGMTVFSKLL+GT+H+KSYDWV D T+L KL
Sbjct: 129 CDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDAPMRDSKTRLAKLK 188
Query: 63 KGMLF 67
F
Sbjct: 189 VDSTF 193
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 7/57 (12%)
Query: 14 IGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWV-------EDTTQLLKLSK 63
IGIFC+P SS+IPLHNHPGMTV SKL+YG++HVKSYDW+ ED +Q + +K
Sbjct: 84 IGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYDWLEPQLTEPEDPSQEARPAK 140
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
Query: 14 IGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVE-DTTQL 58
IGIFC+P SIIPLHNHPGMTV SKL+YG++HVKSYDW E D ++L
Sbjct: 84 IGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYDWAEPDQSEL 129
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 13 QIGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVEDTTQ 57
I IFC+P S +IPLHNHP MTVFSKLL+GT+H+KSYDWV D+ Q
Sbjct: 119 SICIFCLPPSGVIPLHNHPEMTVFSKLLFGTMHIKSYDWVPDSPQ 163
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 34/38 (89%)
Query: 16 IFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVE 53
IFC P SS+IPLH+HP M VFSK+LYG++HVK+YDWVE
Sbjct: 119 IFCFPTSSVIPLHDHPEMAVFSKILYGSLHVKAYDWVE 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.141 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,253,166
Number of extensions: 77139
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 5
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)